RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 RAPGEF5Q92565 580 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 HAPLN3Q96S86 360 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 PRMT1Q99873 361 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 DCLK3Q9C098 648 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 DHX35Q9H5Z1 703 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 LSM7Q9UK45 103 aaKnown RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 JRKLQ9Y4A0 524 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 HS3ST4Q9Y661 456 aa17.18■□□□□ 0.34
VPS4A-202ENST00000562754 ZFP37Q9Y6Q3 630 aaPredicted RBP17.18■□□□□ 0.34
VPS4A-202ENST00000562754 GOLGA6L7A0A1B0GV03 622 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 HEPACAM2A8MVW5 462 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 C2CD4DB7Z1M9 353 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 PI4K2BG5E9Z4 385 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 LATS1O95835 1130 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 SLC6A4P31645 630 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 L1CAMP32004 1257 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 RPS6KA1Q15418 735 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 DPYSL2Q16555 572 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 MANEALQ5VSG8 457 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 RAP1GAP2Q684P5 730 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 PARM1Q6UWI2 310 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 SYT10Q6XYQ8 523 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 C14orf80Q86SX3 495 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 CHSY1Q86X52 802 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 FAM217AQ8IXS0 508 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 ZNF683Q8IZ20 524 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 TDRD5Q8NAT2 981 aaKnown RBP17.17■□□□□ 0.34
VPS4A-202ENST00000562754 FAM71BQ8TC56 605 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 AZIN2Q96A70 460 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 MYEOVQ96EZ4 313 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 KXD1Q9BQD3 176 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 PHF7Q9BWX1 381 aaPredicted RBP17.17■□□□□ 0.34
VPS4A-202ENST00000562754 SIK2Q9H0K1 926 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 OSBPL2Q9H1P3 480 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 PCDH18Q9HCL0 1135 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 OBP2AQ9NY56 170 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 SLC12A6Q9UHW9 1150 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 DNAI1Q9UI46 699 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 STOML2Q9UJZ1 356 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 NEU3Q9UQ49 428 aa17.17■□□□□ 0.34
VPS4A-202ENST00000562754 COL4A3Q01955 1670 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 LRRD1A4D1F6 860 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 C3orf70A6NLC5 250 aaPredicted RBP17.16■□□□□ 0.34
VPS4A-202ENST00000562754 GFRA2O00451 464 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 CD48P09326 243 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 IL9P15248 144 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 TACR2P21452 398 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 SLC11A2P49281 568 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 VCPP55072 806 aaKnown RBP17.16■□□□□ 0.34
VPS4A-202ENST00000562754 CDH6P55285 790 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 HTR4Q13639 388 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 VITQ6UXI7 678 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 ANKS1BQ7Z6G8 1248 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 UBL4BQ8N7F7 174 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 BPIFB1Q8TDL5 484 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 TSC1Q92574 1164 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 FGF14Q92915 247 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 ASIC4Q96FT7 647 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 PRICKLE1Q96MT3 831 aaPredicted RBP17.16■□□□□ 0.34
VPS4A-202ENST00000562754 PSMB7Q99436 277 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 NAPGQ99747 312 aaPredicted RBP17.16■□□□□ 0.34
VPS4A-202ENST00000562754 PLA2G2FQ9BZM2 168 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 ZFP14Q9HCL3 533 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 DDX56Q9NY93 547 aaKnown RBP17.16■□□□□ 0.34
VPS4A-202ENST00000562754 DOCK4Q8N1I0 1966 aa17.16■□□□□ 0.34
VPS4A-202ENST00000562754 ANHXE9PGG2 379 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 TRDMT1O14717 391 aaKnown RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 ZNF500O60304 480 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 KDELR1P24390 212 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 IRAK1P51617 712 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 MLLT6P55198 1093 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 RWDD2BP57060 319 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 NRG1Q02297 640 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 MTA1Q13330 715 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 ZNF211Q13398 564 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 AUHQ13825 339 aaKnown RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 DPYSL3Q14195 570 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 PPP6R3Q5H9R7 873 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 ZFYVE27Q5T4F4 411 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 ADGRF1Q5T601 910 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 AADACL2Q6P093 401 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 RFWD3Q6PCD5 774 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 MFSD7Q6UXD7 560 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 EXD1Q8NHP7 514 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 UBE2Q2Q8WVN8 375 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 RNF25Q96BH1 459 aaPredicted RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 P2RY11Q96G91 374 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 C1orf74Q96LT6 269 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 RPP25Q9BUL9 199 aaKnown RBP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 OR12D3Q9UGF7 316 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 ZNF510Q9Y2H8 683 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.15■□□□□ 0.34
VPS4A-202ENST00000562754 WNT6Q9Y6F9 365 aa17.15■□□□□ 0.34
VPS4A-202ENST00000562754 EYSQ5T1H1 3165 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 E9PAM4 449 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 ECI2O75521 394 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 LRIG2O94898 1065 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 PYGMP11217 842 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 GOT1P17174 413 aa17.14■□□□□ 0.33
VPS4A-202ENST00000562754 HOXC13P31276 330 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms