RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 THG1LQ9NWX6 298 aaKnown RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 ARHGEF38Q9NXL2 777 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 WNT16Q9UBV4 365 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 STOML2Q9UJZ1 356 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 LSM7Q9UK45 103 aaKnown RBP10.16□□□□□ -0.78
CLK3-208ENST00000562626 STAP1Q9ULZ2 295 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 PCDHA13Q9Y5I0 950 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 HS3ST4Q9Y661 456 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 ZDBF2Q9HCK1 2354 aa10.16□□□□□ -0.78
CLK3-208ENST00000562626 DOCK9Q9BZ29 2069 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 EIF3CLB5ME19 914 aaKnown RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 FAM72CH0Y354 149 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 NFATC1O95644 943 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 TMEM253P0C7T8 217 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 MYBL1P10243 752 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 CHRM1P11229 460 aaPredicted RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 PSMA2P25787 234 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 RDXP35241 583 aaKnown RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 MAGEA1P43355 309 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 RPS24P62847 133 aaKnown RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 SIGLEC14Q08ET2 396 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 FZD5Q13467 585 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 PPP2R5DQ14738 602 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 CA9Q16790 459 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 MS4A13Q5J8X5 152 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 FAM72AQ5TYM5 149 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 NUGGCQ68CJ6 796 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 FAM72DQ6L9T8 149 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 PPP1R2P3Q6NXS1 205 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 FAM72BQ86X60 149 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 ETFBKMTQ8IXQ9 262 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 CFAP52Q8N1V2 620 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 PYROXD2Q8N2H3 581 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 CPXM2Q8N436 756 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 KIAA1958Q8N8K9 716 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 ZNF564Q8TBZ8 553 aaPredicted RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 CSGALNACT1Q8TDX6 532 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 ATP2A3Q93084 1043 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 IGSF8Q969P0 613 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 EIF3CQ99613 913 aaKnown RBP10.15□□□□□ -0.78
CLK3-208ENST00000562626 CNPY3Q9BT09 278 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 DCLK3Q9C098 648 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 TKTL2Q9H0I9 626 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 KCNF1Q9H3M0 494 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 GOLPH3Q9H4A6 298 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.15□□□□□ -0.78
CLK3-208ENST00000562626 GPATCH2LQ9NWQ4 482 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 RRN3Q9NYV6 651 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 TBC1D14Q9P2M4 693 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 TRIM10Q9UDY6 481 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 ANAPC7Q9UJX3 599 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 NEU3Q9UQ49 428 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 DUSP10Q9Y6W6 482 aa10.15□□□□□ -0.78
CLK3-208ENST00000562626 PLXND1Q9Y4D7 1925 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TMEM221A6NGB7 291 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 NEDD8-MDP1E9PL57 170 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 M0R296 226 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 SLC9A3R1O14745 358 aaPredicted RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 PI15O43692 258 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 LRCH4O75427 683 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 PENKP01210 267 aaPredicted RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 APOEP02649 317 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 ADH5P11766 374 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TYRP14679 529 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 GLULP15104 373 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TACR2P21452 398 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TARSP26639 723 aaKnown RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 IL1R2P27930 398 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 HOXD9P28356 352 aaPredicted RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 HOXC13P31276 330 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 CCR1P32246 355 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 GBP1P32455 592 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 HARS2P49590 506 aaKnown RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 NUMBP49757 651 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 STARD6P59095 220 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TAS2R40P59535 323 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 KDSRQ06136 332 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 PON2Q15165 354 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 ANO4Q32M45 955 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 ADGRF1Q5T601 910 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 RNF43Q68DV7 783 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 FSTL4Q6MZW2 842 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 STRADAQ7RTN6 431 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 LRRC8AQ8IWT6 810 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 CCDC170Q8IYT3 715 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 LGI2Q8N0V4 545 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 CPA6Q8N4T0 437 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 OR52K2Q8NGK3 314 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 SLC35G2Q8TBE7 412 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 AZIN2Q96A70 460 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 OTUB2Q96DC9 234 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TRIM11Q96F44 468 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 ZNF830Q96NB3 372 aaPredicted RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 BBS2Q9BXC9 721 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 SIK2Q9H0K1 926 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 TBC1D17Q9HA65 648 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 RBM12Q9NTZ6 932 aaKnown RBP10.14□□□□□ -0.79
CLK3-208ENST00000562626 MARK1Q9P0L2 795 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 CTTNBP2NLQ9P2B4 639 aa10.14□□□□□ -0.79
CLK3-208ENST00000562626 FBXL21Q9UKT6 434 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms