RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 IFRD2Q12894 506 aaPredicted RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 KCNJ11Q14654 390 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 SEPT7Q16181 437 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZSCAN26Q16670 478 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 SLC39A12Q504Y0 691 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NCBP2-AS2Q69YL0 99 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 SCARA3Q6AZY7 606 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 NAPEPLDQ6IQ20 393 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 SLC8B1Q6J4K2 584 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 KIAA1841Q6NSI8 718 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TRNP1Q6NT89 227 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ELMSAN1Q6PJG2 1045 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 DENND5BQ6ZUT9 1274 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CTU1Q7Z7A3 348 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZC3H18Q86VM9 953 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 TAX1BP1Q86VP1 789 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 LCA5Q86VQ0 697 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CPNE8Q86YQ8 564 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TRIM42Q8IWZ5 723 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZBED8Q8IZ13 594 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TMEM199Q8N511 208 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZNF784Q8NCA9 323 aaPredicted RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZMIZ2Q8NF64 920 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 DBF4BQ8NFT6 615 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 DQX1Q8TE96 717 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 DYDC1Q8WWB3 177 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ARHGEF2Q92974 986 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 ATP2A3Q93084 1043 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 PIWIL1Q96J94 861 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 BTN2A3PQ96KV6 586 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CASD1Q96PB1 797 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 DEFB118Q96PH6 123 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 TSGA13Q96PP4 275 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 KCTD15Q96SI1 283 aaPredicted RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 RTP3Q9BQQ7 232 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 LRRC40Q9H9A6 602 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 VPS37BQ9H9H4 285 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 USP29Q9HBJ7 922 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 WDR6Q9NNW5 1121 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 INTS9Q9NV88 658 aaKnown RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 ABI2Q9NYB9 513 aaPredicted RBP7.75□□□□□ -1.17
VPS39-204ENST00000561818 DTLQ9NZJ0 730 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 SAMD15Q9P1V8 674 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 MTRRQ9UBK8 725 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 OR12D3Q9UGF7 316 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 ZMYM5Q9UJ78 669 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 RWDD3Q9Y3V2 267 aa7.75□□□□□ -1.17
VPS39-204ENST00000561818 CXorf51AA0A1B0GTR3 108 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 GMNCA6NCL1 334 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 MEIS3P2A8K0S8 358 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CLDN5O00501 218 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TNFRSF10BO14763 440 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TP73O15350 636 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PQBP1O60828 265 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 NBNO60934 754 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ATP2C2O75185 946 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 KIAA0754O94854 1291 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 FGF19O95750 216 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 APRTP07741 180 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CD48P09326 243 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CLTBP09497 229 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 GOT1P17174 413 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PAMP19021 973 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CCNCP24863 283 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 RBL1P28749 1068 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 HPDP32754 393 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 LSP1P33241 339 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 GARSP41250 739 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 MSH2P43246 934 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 BRCC3P46736 316 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 IFNAR2P48551 515 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 MAPKAPK2P49137 400 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 IRAK1P51617 712 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ATN1P54259 1190 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 OXCT1P55809 520 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 YBEYP58557 167 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 EIF4EBP2Q13542 120 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 BTG3Q14201 252 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 MBTPS1Q14703 1052 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TAF5Q15542 800 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TRADDQ15628 312 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 TRIP13Q15645 432 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 TRIP4Q15650 581 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 SLC14A2Q15849 920 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CCDC142Q17RM4 750 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PARP15Q460N3 678 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 PABPC1LQ4VXU2 614 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 GKAP1Q5VSY0 366 aaPredicted RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 FAM171A1Q5VUB5 890 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 SNX30Q5VWJ9 437 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 DAB2IPQ5VWQ8 1189 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 LRRC8BQ6P9F7 803 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 C1orf228Q6PIY5 440 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 KCNT2Q6UVM3 1135 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CCDC91Q7Z6B0 441 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 YTHDF3Q7Z739 585 aaKnown RBP7.74□□□□□ -1.17
VPS39-204ENST00000561818 ITIH5Q86UX2 942 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 LRRC6Q86X45 466 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 CCDC13Q8IYE1 715 aa7.74□□□□□ -1.17
VPS39-204ENST00000561818 ATPAF2Q8N5M1 289 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms