RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 PI4K2BG5E9Z4 385 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TNFRSF10AO00220 468 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 HOXC11O43248 304 aaPredicted RBP22.57■■□□□ 1.2
SNX1-210ENST00000560260 LRCH4O75427 683 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 MTA2O94776 668 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 ADH5P11766 374 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TCF4P15884 667 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 CTHP32929 405 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TCEAL1Q15170 157 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 FYB2Q5VWT5 728 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 TPRG1Q6ZUI0 275 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 CYP4V2Q6ZWL3 525 aaPredicted RBP22.57■■□□□ 1.2
SNX1-210ENST00000560260 CHSY1Q86X52 802 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 BHMTQ93088 406 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 MAGEB5Q9BZ81 275 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 LACRTQ9GZZ8 138 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 KCNF1Q9H3M0 494 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 SALL4Q9UJQ4 1053 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 FBXL21Q9UKT6 434 aa22.57■■□□□ 1.2
SNX1-210ENST00000560260 ARHGAP6O43182 974 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 ADH1CP00326 375 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 TACR2P21452 398 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 OPRD1P41143 372 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 VAV2P52735 878 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 SIGLEC14Q08ET2 396 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 C14orf80Q86SX3 495 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 SIX5Q8N196 739 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 NIPA2Q8N8Q9 360 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 EPHX3Q9H6B9 360 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 PLK2Q9NYY3 685 aa22.56■■□□□ 1.2
SNX1-210ENST00000560260 NEDD8-MDP1E9PL57 170 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 IPO7O95373 1038 aaKnown RBP22.55■■□□□ 1.2
SNX1-210ENST00000560260 PENKP01210 267 aaPredicted RBP22.55■■□□□ 1.2
SNX1-210ENST00000560260 MIPP30301 263 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 ADRA1BP35368 520 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 CHKAP35790 457 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 IRAK1P51617 712 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 MESP2Q0VG99 397 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 TRIM67Q6ZTA4 783 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 RHOT2Q8IXI1 618 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 ETFBKMTQ8IXQ9 262 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 ZNF683Q8IZ20 524 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 NTAN1Q96AB6 310 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 BBS2Q9BXC9 721 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 IP6K2Q9UHH9 426 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 CLEC4EQ9ULY5 219 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 ADGRG1Q9Y653 693 aa22.55■■□□□ 1.2
SNX1-210ENST00000560260 MIA3Q5JRA6 1907 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 PJA2O43164 708 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 PROSCO94903 275 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 PDGFBP01127 241 aaPredicted RBP22.54■■□□□ 1.2
SNX1-210ENST00000560260 ALADP13716 330 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 TYRP14679 529 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 CD72P21854 359 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 HOXD9P28356 352 aaPredicted RBP22.54■■□□□ 1.2
SNX1-210ENST00000560260 GAD2Q05329 585 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 SCAPQ12770 1279 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 AUHQ13825 339 aaKnown RBP22.54■■□□□ 1.2
SNX1-210ENST00000560260 ANO4Q32M45 955 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 FBXL22Q6P050 247 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 SCYL2Q6P3W7 929 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 LGI2Q8N0V4 545 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 SIK2Q9H0K1 926 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 C8orf33Q9H7E9 229 aaPredicted RBP22.54■■□□□ 1.2
SNX1-210ENST00000560260 LUC7LQ9NQ29 371 aaKnown RBP22.54■■□□□ 1.2
SNX1-210ENST00000560260 GPATCH2LQ9NWQ4 482 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 TRIM10Q9UDY6 481 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 SLC12A6Q9UHW9 1150 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 PAXBP1Q9Y5B6 917 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 DUSP10Q9Y6W6 482 aa22.54■■□□□ 1.2
SNX1-210ENST00000560260 MYO1FO00160 1098 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 TRIM24O15164 1050 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 IL1R2P27930 398 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 SLC6A11P48066 632 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 MLLT6P55198 1093 aaPredicted RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 RPS24P62847 133 aaKnown RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 PRKCQQ04759 706 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 PIGHQ14442 188 aaPredicted RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 RNF43Q68DV7 783 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 TXNRD3NBQ6F5E7 133 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 RALGPS2Q86X27 583 aaPredicted RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 CIR1Q86X95 450 aaPredicted RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 CFAP52Q8N1V2 620 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 NAT16Q8N8M0 369 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 IGSF8Q969P0 613 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 ZNF830Q96NB3 372 aaPredicted RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 HAPLN3Q96S86 360 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 FBRSL1Q9HCM7 1045 aaKnown RBP22.53■■□□□ 1.2
SNX1-210ENST00000560260 TMEM51Q9NW97 253 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 PCSK1NQ9UHG2 260 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 VANGL2Q9ULK5 521 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 FZD10Q9ULW2 581 aa22.53■■□□□ 1.2
SNX1-210ENST00000560260 A0A0A6YYK5 440 aaPredicted RBP22.52■■□□□ 1.2
SNX1-210ENST00000560260 TMEM110-MUSTN1A8MSY1 372 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 FAM72CH0Y354 149 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 CACNG3O60359 315 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 PCK1P35558 622 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 HADHBP55084 474 aaKnown RBP22.52■■□□□ 1.2
SNX1-210ENST00000560260 STARD6P59095 220 aa22.52■■□□□ 1.2
SNX1-210ENST00000560260 KRT83P78385 493 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms