RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 PRKD1Q15139 912 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 KYNUQ16719 465 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 SPOUT1Q5T280 376 aaKnown RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 AGBL2Q5U5Z8 902 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 KIAA1841Q6NSI8 718 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 TMCO2Q7Z6W1 182 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 UBE2Q1Q7Z7E8 422 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 GPR152Q8TDT2 470 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 FBXO32Q969P5 355 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 SLC39A13Q96H72 371 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 TMEM169Q96HH4 297 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 CLSTN3Q9BQT9 956 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 HERC2P3Q9BVR0 1158 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 TTLL2Q9BWV7 592 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 ROPN1BQ9BZX4 212 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 ROPN1Q9HAT0 212 aaPredicted RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 DNAJC17Q9NVM6 304 aaKnown RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.1□□□□□ -0.31
USP3-213ENST00000559711 SPG21Q9NZD8 308 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 AFF4Q9UHB7 1163 aaKnown RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 TLR6Q9Y2C9 796 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 MRPL42Q9Y6G3 142 aaKnown RBP13.1□□□□□ -0.31
USP3-213ENST00000559711 PATJQ8NI35 1801 aa13.1□□□□□ -0.31
USP3-213ENST00000559711 E7ESA3 106 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 CHADO15335 359 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 EIF3HO15372 352 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP3-213ENST00000559711 NCAM2O15394 837 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 ABLIM3O94929 683 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 GLUD2P49448 558 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 NRG1Q02297 640 aaPredicted RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 TAF10Q12962 218 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 KCNJ11Q14654 390 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 ARTNQ5T4W7 220 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 EMC10Q5UCC4 262 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 MANEALQ5VSG8 457 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 TPGS2Q68CL5 300 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 HEATR6Q6AI08 1181 aaKnown RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 FAM117BQ6P1L5 589 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 CENPUQ71F23 418 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 C16orf59Q7L2K0 433 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 DDX53Q86TM3 631 aaKnown RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 COLGALT1Q8NBJ5 622 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 ZNF461Q8TAF7 563 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 HTR3CQ8WXA8 447 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 TLR8Q9NR97 1041 aaKnown RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 OLA1Q9NTK5 396 aaKnown RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 SNX10Q9Y5X0 201 aa13.09□□□□□ -0.31
USP3-213ENST00000559711 KIAA0100Q14667 2235 aaKnown RBP13.09□□□□□ -0.31
USP3-213ENST00000559711 TCRBV7S3A2A0A539 114 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 SLC38A8A6NNN8 435 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 PPP1R12AO14974 1030 aaPredicted RBP13.08□□□□□ -0.31
USP3-213ENST00000559711 MSI1O43347 362 aaKnown RBP13.08□□□□□ -0.31
USP3-213ENST00000559711 PAGE1O75459 146 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 TCEA3O75764 348 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 TMEM63AO94886 807 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 ACSL3O95573 720 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 ABHD2P08910 425 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 SLC2A3P11169 496 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 RPL17P18621 184 aaKnown RBP13.08□□□□□ -0.31
USP3-213ENST00000559711 ATF6P18850 670 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 HOXC13P31276 330 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 ARL4CP56559 192 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 BASP1P80723 227 aaKnown RBP13.08□□□□□ -0.31
USP3-213ENST00000559711 TERF2Q15554 542 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 HIF1AQ16665 826 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 KRT71Q3SY84 523 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 C6orf118Q5T5N4 469 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 RASIP1Q5U651 963 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 GPR65Q8IYL9 337 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 ZNF276Q8N554 614 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 FAM76AQ8TAV0 307 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 LRRN4Q8WUT4 740 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 PGM2Q96G03 612 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 C1orf74Q96LT6 269 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 TTC25Q96NG3 672 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 LGMNQ99538 433 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 UBE2OQ9C0C9 1292 aaKnown RBP13.08□□□□□ -0.31
USP3-213ENST00000559711 BRD8Q9H0E9 1235 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 PRDM12Q9H4Q4 367 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 LRRC4CQ9HCJ2 640 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 SAYSD1Q9NPB0 183 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 RAB6BQ9NRW1 208 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 NUDT5Q9UKK9 219 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 NEU3Q9UQ49 428 aa13.08□□□□□ -0.31
USP3-213ENST00000559711 LTBP2Q14767 1821 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 A0A0A0MRY4 1105 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 HSPA1AP0DMV8 641 aaKnown RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 HSPA1BP0DMV9 641 aaKnown RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 VAV1P15498 845 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 EPHB2P29323 1055 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 MLLT6P55198 1093 aaPredicted RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 KCTD16Q68DU8 428 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 CCDC33Q8N5R6 958 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 CCDC110Q8TBZ0 833 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 GIPC2Q8TF65 315 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 EXOC4Q96A65 974 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 FCRL2Q96LA5 508 aaPredicted RBP13.08□□□□□ -0.32
USP3-213ENST00000559711 C9orf72Q96LT7 481 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 SPATA13Q96N96 652 aa13.08□□□□□ -0.32
USP3-213ENST00000559711 FERMT1Q9BQL6 677 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms