RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 CYP17A1P05093 508 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 COMTP21964 271 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 MAN1A1P33908 653 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 PCK1P35558 622 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 IFNAR2P48551 515 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 SLC11A2P49281 568 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 IRAK1P51617 712 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 MLLT6P55198 1093 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ACAP1Q15027 740 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 PDGFRLQ15198 375 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 DHCR24Q15392 516 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 GAB4Q2WGN9 574 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ATP13A4Q4VNC1 1196 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 LY6G5CQ5SRR4 150 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 FAM72AQ5TYM5 149 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 FAM72DQ6L9T8 149 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ZNF662Q6ZS27 426 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 TPGS1Q6ZTW0 290 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 FAM72BQ86X60 149 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 REXO1L1PQ8IX06 675 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ZNF683Q8IZ20 524 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ATP6V0D2Q8N8Y2 350 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 NTAN1Q96AB6 310 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 CHFRQ96EP1 664 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 PRICKLE1Q96MT3 831 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-227ENST00000557269 SIK2Q9H0K1 926 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ZWILCHQ9H900 591 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 TRMT1Q9NXH9 659 aaKnown RBP13.28□□□□□ -0.28
SHMT2-227ENST00000557269 MUTYHQ9UIF7 546 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 GUCA1BQ9UMX6 200 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ZNF510Q9Y2H8 683 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 ALG6Q9Y672 507 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 COL4A3Q01955 1670 aa13.28□□□□□ -0.28
SHMT2-227ENST00000557269 SLC9A3R1O14745 358 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 LATS1O95835 1130 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SRFP11831 508 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 TACR2P21452 398 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SSR1P43307 286 aaKnown RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SOX9P48436 509 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 NAP1L1P55209 391 aaKnown RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SCAPQ12770 1279 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 RUNX3Q13761 415 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 AUHQ13825 339 aaKnown RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SMTNL2Q2TAL5 461 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 KCNT1Q5JUK3 1230 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 NAIF1Q69YI7 327 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 FBXL22Q6P050 247 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SLFN11Q7Z7L1 901 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 LGI2Q8N0V4 545 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 CFAP52Q8N1V2 620 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 CPXM2Q8N436 756 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 LRRC57Q8N9N7 239 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 IRF7Q92985 503 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 BHMTQ93088 406 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 IGSF8Q969P0 613 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 OTUB2Q96DC9 234 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 HAPLN3Q96S86 360 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 UHRF1Q96T88 793 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SNRNP25Q9BV90 132 aaKnown RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 IRX2Q9BZI1 471 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-227ENST00000557269 ECT2Q9H8V3 914 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SPHK2Q9NRA0 654 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SLC12A6Q9UHW9 1150 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 CLEC4EQ9ULY5 219 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 DUSP12Q9UNI6 340 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SORCS3Q9UPU3 1222 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 CAPN6Q9Y6Q1 641 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 COL4A2P08572 1712 aa13.27□□□□□ -0.29
SHMT2-227ENST00000557269 SHISA7A6NL88 538 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 PRPSAP2O60256 369 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 PALMO75781 387 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 RARAP10276 462 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 CHKAP35790 457 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 GJC1P36383 396 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 RPS24P62847 133 aaKnown RBP13.26□□□□□ -0.29
SHMT2-227ENST00000557269 ARL13BQ3SXY8 428 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 ERMARDQ5T6L9 678 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 FYB2Q5VWT5 728 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 C11orf63Q6NUN7 778 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 DAAM2Q86T65 1068 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 C12orf40Q86WS4 652 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 CHSY1Q86X52 802 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 CIR1Q86X95 450 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-227ENST00000557269 C17orf53Q8N3J3 647 aaPredicted RBP13.26□□□□□ -0.29
SHMT2-227ENST00000557269 TXLNBQ8N3L3 684 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 ATP2A3Q93084 1043 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 C1orf74Q96LT6 269 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 TSGA10Q9BZW7 698 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 OSBPL2Q9H1P3 480 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 SLC2A4RGQ9NR83 387 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 HEBP1Q9NRV9 189 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 KLHL11Q9NVR0 708 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 TMEM51Q9NW97 253 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 PLK2Q9NYY3 685 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 LCMT1Q9UIC8 334 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 VANGL2Q9ULK5 521 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 NEU3Q9UQ49 428 aa13.26□□□□□ -0.29
SHMT2-227ENST00000557269 TICRRQ7Z2Z1 1910 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 NEDD8-MDP1E9PL57 170 aa13.25□□□□□ -0.29
SHMT2-227ENST00000557269 KRT86O43790 486 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms