RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 NBL1P41271 181 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 CXCR3P49682 368 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 SULT1E1P49888 294 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 DEUP1Q05D60 604 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 E2F5Q15329 346 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 MS4A13Q5J8X5 152 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 BRMS1LQ5PSV4 323 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 C10orf76Q5T2E6 689 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ACBD5Q5T8D3 534 aaPredicted RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 EMC10Q5UCC4 262 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 SPECC1LQ69YQ0 1117 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 NADSYN1Q6IA69 706 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 RFWD3Q6PCD5 774 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ZC3H14Q6PJT7 736 aaKnown RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 MON1BQ7L1V2 547 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ZNF571Q7Z3V5 609 aaPredicted RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 TRMT11Q7Z4G4 463 aaKnown RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ATRIPQ8WXE1 791 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 SELENOOQ9BVL4 669 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 SEMA4AQ9H3S1 761 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 METTL5Q9NRN9 209 aaKnown RBP11.08□□□□□ -0.64
LINC00239-201ENST00000556973 PIGVQ9NUD9 493 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 C2orf42Q9NWW7 574 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 ZSCAN32Q9NX65 697 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 CALCOCO1Q9P1Z2 691 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 MMP17Q9ULZ9 603 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 PCDHGA2Q9Y5H1 932 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 F5P12259 2224 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 FANCMQ8IYD8 2048 aa11.08□□□□□ -0.64
LINC00239-201ENST00000556973 CCDC163A0A0D9SF12 145 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 PROB1E7EW31 1015 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TBL1XO60907 577 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 RTN2O75298 545 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 GYPCP04921 128 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 SERPING1P05155 500 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 SKILP12757 684 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TDGF1P13385 188 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 HNRNPLP14866 589 aaKnown RBP eCLIP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 PDGFRAP16234 1089 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TFE3P19532 575 aaPredicted RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TACR2P21452 398 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 CASP14P31944 242 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 RDXP35241 583 aaKnown RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 FLT3P36888 993 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 PLA2G5P39877 138 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TRIM14Q14142 442 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 DMC1Q14565 340 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 EOGTQ5NDL2 527 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 E4F1Q66K89 784 aaPredicted RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 RAP1GAP2Q684P5 730 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 SDE2Q6IQ49 451 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 BNIPLQ7Z465 357 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 PHLDB2Q86SQ0 1253 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 CCDC117Q8IWD4 279 aaPredicted RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 SFTPA1Q8IWL2 248 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 DRC7Q8IY82 874 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 MCOLN2Q8IZK6 566 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 ZNF513Q8N8E2 541 aaPredicted RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 IL17RCQ8NAC3 791 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 HJURPQ8NCD3 748 aaPredicted RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 ZBTB44Q8NCP5 570 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 C3orf20Q8ND61 904 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 FIBINQ8TAL6 211 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 UCMAQ8WVF2 138 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 RXFP2Q8WXD0 754 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 CFAP57Q96MR6 1250 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TBCBQ99426 244 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 FAM86C1Q9NVL1 165 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 ARHGEF38Q9NXL2 777 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 XPO7Q9UIA9 1087 aaKnown RBP11.07□□□□□ -0.64
LINC00239-201ENST00000556973 CLEC4EQ9ULY5 219 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 ZDBF2Q9HCK1 2354 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 CACNA1IQ9P0X4 2223 aa11.07□□□□□ -0.64
LINC00239-201ENST00000556973 TCRBV5S1A1TA0A578 114 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 ANTXRLA6NF34 631 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 C2CD4BA6NLJ0 364 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 PRRT4C9JH25 899 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 F5H5T6 163 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 DDX3XO00571 662 aaKnown RBP eCLIP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 NPC1O15118 1278 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 LILRB5O75023 590 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 KLF8O95600 359 aaPredicted RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 FTLP02792 175 aaPredicted RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 TPM1P09493 284 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 NTSR1P30989 418 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 SDC4P31431 198 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 CNR2P34972 360 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 RFC1P35251 1148 aaPredicted RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 PTPN9P43378 593 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 SGSHP51688 502 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 DGKEP52429 567 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 EIF4HQ15056 248 aaKnown RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 CRY1Q16526 586 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 GEN1Q17RS7 908 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 CCDC14Q49A88 953 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 TTC39BQ5VTQ0 682 aaPredicted RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 OTUD1Q5VV17 481 aaPredicted RBP11.06□□□□□ -0.64
LINC00239-201ENST00000556973 HGSNATQ68CP4 663 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 RNF43Q68DV7 783 aa11.06□□□□□ -0.64
LINC00239-201ENST00000556973 TRNP1Q6NT89 227 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms