RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 LEFTY2O00292 366 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ETV2O00321 342 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 CLTBP09497 229 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 NR2F1P10589 423 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ALADP13716 330 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 TM4SF1P30408 202 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ACSL1P33121 698 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ABCD1P33897 745 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 HADHAP40939 763 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 IRAK1P51617 712 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 RPL7AP62424 266 aaKnown RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 KRT83P78385 493 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 OCA2Q04671 838 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 LRMPQ12912 555 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 MAPKAPK5Q8IW41 473 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 GSPT2Q8IYD1 628 aaKnown RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ANKRD35Q8N283 1001 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 D2HGDHQ8N465 521 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 MIEF2Q96C03 454 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 SPATA17Q96L03 361 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 C5orf34Q96MH7 638 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 OR14A2Q96R54 314 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 DCLRE1CQ96SD1 692 aaKnown RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 KRTAP4-7Q9BYR0 210 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 SMARCAD1Q9H4L7 1026 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 GLOD4Q9HC38 313 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 LIMA1Q9UHB6 759 aaKnown RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 CHORDC1Q9UHD1 332 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 ZNF711Q9Y462 761 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 KCTD3Q9Y597 815 aa6.27□□□□□ -1.41
SCFD1-208ENST00000553278 OAS3Q9Y6K5 1087 aaKnown RBP6.27□□□□□ -1.41
SCFD1-208ENST00000553278 CARMIL2Q6F5E8 1435 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 M0QZQ0 153 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 GJB3O75712 270 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 SEC14L2O76054 403 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 APOBEC3AP31941 199 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 PPARGP37231 505 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 EIF3BP55884 814 aaKnown RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 PPP2CBP62714 309 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 PPP2CAP67775 309 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 MESP2Q0VG99 397 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 NEXNQ0ZGT2 675 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 HECTD3Q5T447 861 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 RPUSD3Q6P087 351 aaKnown RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 WDR93Q6P2C0 686 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 TAX1BP1Q86VP1 789 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 CAND1Q86VP6 1230 aaKnown RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 TEX11Q8IYF3 940 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 DDX51Q8N8A6 666 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 RSPRY1Q96DX4 576 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 RNFT2Q96EX2 444 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 EYA3Q99504 573 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 NPAS1Q99742 590 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 MAK16Q9BXY0 300 aaKnown RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 TPSD1Q9BZJ3 242 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 AMBRA1Q9C0C7 1298 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 TTYH1Q9H313 450 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 PCDHB16Q9NRJ7 776 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 THAP1Q9NVV9 213 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 EHD2Q9NZN4 543 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 CORO1CQ9ULV4 474 aaPredicted RBP6.26□□□□□ -1.41
SCFD1-208ENST00000553278 KCNE2Q9Y6J6 123 aa6.26□□□□□ -1.41
SCFD1-208ENST00000553278 RPGRIP1LQ68CZ1 1315 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 C3orf70A6NLC5 250 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 TEX22C9J3V5 150 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 GRM8O00222 908 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ZNF213O14771 459 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 GPR42O15529 346 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ERAL1O75616 437 aaKnown RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 RECQL4O94761 1208 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 PGM3O95394 542 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 VNN1O95497 513 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 METTL18O95568 372 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 COX7A2P14406 83 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ZNF37AP17032 561 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 MSX2P35548 267 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 EIF2DP41214 584 aaKnown RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 UBA7P41226 1012 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 CTCFP49711 727 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 TAS2R50P59544 299 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 UFM1P61960 85 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 HHEXQ03014 270 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 PRPF4BQ13523 1007 aaKnown RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 TMEM266Q2M3C6 531 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ZNF385BQ569K4 471 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 NAIF1Q69YI7 327 aaPredicted RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 GRHL2Q6ISB3 625 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ACSM6Q6P461 480 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 C16orf89Q6UX73 402 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 RRM2BQ7LG56 351 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 GLG1Q92896 1179 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 VMP1Q96GC9 406 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 ACTRT3Q9BYD9 372 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 SIL1Q9H173 461 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 TLR8Q9NR97 1041 aaKnown RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 MPP6Q9NZW5 540 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 MORF4L1Q9UBU8 362 aa6.25□□□□□ -1.41
SCFD1-208ENST00000553278 EIF2B4Q9UI10 523 aaKnown RBP6.25□□□□□ -1.41
SCFD1-208ENST00000553278 CCDC187A0A096LP49 1063 aa6.24□□□□□ -1.41
SCFD1-208ENST00000553278 LIPT2A6NK58 231 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms