RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZWINTO95229 277 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 ITGA2BP08514 1039 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 WEE2P0C1S8 567 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM253P0C7T8 217 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 DLATP10515 647 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 FGFR3P22607 806 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CTNNA2P26232 953 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 LRPAP1P30533 357 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 RPL9P32969 192 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CYP24A1Q07973 514 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 PPP3CAQ08209 521 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 ADCY1Q08828 1119 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TMEM132DQ14C87 1099 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 AAK1Q2M2I8 961 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 SLC45A4Q5BKX6 768 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TTC27Q6P3X3 843 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 SPATA24Q86W54 205 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 BRSK2Q8IWQ3 736 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 KBTBD2Q8IY47 623 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CCDC105Q8IYK2 499 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 SMRP1Q8NCR6 262 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 C10orf82Q8WW14 230 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 BTBD10Q9BSF8 475 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 PHACTR1Q9C0D0 580 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 S1PR5Q9H228 398 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 KRT82Q9NSB4 513 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 LGALS13Q9UHV8 139 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CHMP2BQ9UQN3 213 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 NUB1Q9Y5A7 615 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TIMM13Q9Y5L4 95 aaPredicted RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 PTPRJQ12913 1337 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 hCG_2014768A0A024R1R8 64 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 MBTPS2O43462 519 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 EDF1O60869 148 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TCEA3O75764 348 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 GFPT2O94808 682 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 LDHAP00338 332 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 PABPC4LP0CB38 370 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 VAV1P15498 845 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CYP3A5P20815 502 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 NEK3P51956 506 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 LILRA4P59901 499 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TFAMQ00059 246 aaKnown RBP7.93□□□□□ -1.14
LIMA1-216ENST00000552909 PSMD5Q16401 504 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 C1orf220Q5T0J3 134 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 C9orf57Q5W0N0 161 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 ANKRD54Q6NXT1 300 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 RGS9BPQ6ZS82 235 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 UBL4BQ8N7F7 174 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 ALG3Q92685 438 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 MCUR1Q96AQ8 359 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TUBB6Q9BUF5 446 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 EMILIN2Q9BXX0 1053 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CD320Q9NPF0 282 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 GCNT4Q9P109 453 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 STK39Q9UEW8 545 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TBK1Q9UHD2 729 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 CD207Q9UJ71 328 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 TBC1D30Q9Y2I9 924 aa7.93□□□□□ -1.14
LIMA1-216ENST00000552909 GTPBP10A4D1E9 387 aaKnown RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 MIF4GDA9UHW6 222 aaKnown RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 PIRO00625 290 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 GYG2O15488 501 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 GSC2O15499 205 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 TGM5O43548 720 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CDH16O75309 829 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 TTC4O95801 387 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 ADH1AP07327 375 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 ABCB4P21439 1286 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 COILP38432 576 aaPredicted RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 WDR4P57081 412 aaKnown RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 MYL7Q01449 175 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CETN1Q12798 172 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 SPARCL1Q14515 664 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 VARS2Q5ST30 1063 aaKnown RBP7.92□□□□□ -1.14
LIMA1-216ENST00000552909 SEL1L2Q5TEA6 688 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 DPY19L2P1Q6NXN4 242 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 AADACL2Q6P093 401 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 KLC3Q6P597 504 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 LILRA6Q6PI73 481 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 IZUMO2Q6UXV1 221 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 NLRP9Q7RTR0 991 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CLNKQ7Z7G1 428 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 USP37Q86T82 979 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CYP4X1Q8N118 509 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 C1orf127Q8N9H9 656 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 BEST2Q8NFU1 509 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 OR5B17Q8NGF7 314 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CXorf38Q8TB03 319 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 TMC2Q8TDI7 906 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 ADAMTS19Q8TE59 1207 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 ZNF653Q96CK0 615 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 HAUS1Q96CS2 278 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 SUSD3Q96L08 255 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 CATSPER2Q96P56 530 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 FNBP1Q96RU3 617 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 RMI1Q9H9A7 625 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 SLCO1B3Q9NPD5 702 aa7.92□□□□□ -1.14
LIMA1-216ENST00000552909 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.92□□□□□ -1.141e-7■■■■■ 115.4
LIMA1-216ENST00000552909 DPP3Q9NY33 737 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms