RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MT-CO1P00395 513 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CHRNA1P02708 482 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PIRTP0C851 137 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MYL2P10916 166 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 TYK2P29597 1187 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ARFIP2P53365 341 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MRPS5P82675 430 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 INCA1Q0VD86 236 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 POU6F1Q14863 301 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 FAM187BQ17R55 369 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 KLHL38Q2WGJ6 581 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PLEKHG4Q58EX7 1191 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 FYB2Q5VWT5 728 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PPP1R2P3Q6NXS1 205 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 AGMOQ6ZNB7 445 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PAQR9Q6ZVX9 377 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 TMEM110Q86TL2 294 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 FAM35AQ86V20 835 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 LINC01465Q8N7H1 131 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 TRIB2Q92519 343 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 EXT2Q93063 718 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MFSD3Q96ES6 412 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 STAMBPL1Q96FJ0 436 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 SCYL1Q96KG9 808 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF778Q96MU6 729 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 AGAP2Q99490 1192 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 FAM167BQ9BTA0 163 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ACSS3Q9H6R3 686 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ZFYVE28Q9HCC9 887 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 GNEQ9Y223 722 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CHKBQ9Y259 395 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 GOLGA8QA0A0J9YX86 632 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 GOLGA8OA6NCC3 632 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 GOLGA8NF8WBI6 632 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PIRO00625 290 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ZBTB24O43167 697 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PHGDHO43175 533 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 TSPAN3O60637 253 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 KRT37O76014 449 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 TROVE2P10155 538 aaKnown RBP eCLIP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PRKAR2AP13861 404 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PCK1P35558 622 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ELF3P78545 371 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MRPS6P82932 125 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PURAQ00577 322 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CCDC6Q16204 474 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 EFHC1Q5JVL4 640 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 VWA5B1Q5TIE3 1220 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 NCBP2-AS2Q69YL0 99 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF280DQ6N043 979 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 ISLR2Q6UXK2 745 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 LDB1Q86U70 411 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 LRRTM3Q86VH5 581 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 LONP2Q86WA8 852 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CIR1Q86X95 450 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CDKL3Q8IVW4 592 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 NIPA2Q8N8Q9 360 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 NAT14Q8WUY8 206 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 DCAKDQ8WVC6 231 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 PABPC5Q96DU9 382 aaKnown RBP5.76□□□□□ -1.49
LIMA1-215ENST00000552823 KLHL5Q96PQ7 755 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CYP2S1Q96SQ9 504 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 DUSP16Q9BY84 665 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 CYP4F11Q9HBI6 524 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 NOD2Q9HC29 1040 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MTMR10Q9NXD2 777 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 STAP1Q9ULZ2 295 aa5.76□□□□□ -1.49
LIMA1-215ENST00000552823 MEI4A8MW99 385 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 H3BRJ5 948 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 I6L893 689 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 DIAPH2O60879 1101 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SNRPAP09012 282 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 AKR1A1P14550 325 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NQO1P15559 274 aaKnown RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NFKB1P19838 968 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NCF2P19878 526 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 MATKP42679 507 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CHRNA4P43681 627 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CCR10P46092 362 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SERPINB4P48594 390 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CRYBB1P53674 252 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 CAP1Q01518 475 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 BST1Q10588 318 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF460Q14592 562 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 PDK2Q15119 407 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SLC39A12Q504Y0 691 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SLC45A4Q5BKX6 768 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 BTBD8Q5XKL5 378 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 RGMBQ6NW40 437 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 RASSF3Q86WH2 238 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF280BQ86YH2 543 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ZNF567Q8N184 647 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 RYBPQ8N488 228 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TTC9BQ8N6N2 239 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 FNIP1Q8TF40 1166 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 GIPC2Q8TF65 315 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 ATP2A3Q93084 1043 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 SGSM3Q96HU1 749 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 NCAPGQ9BPX3 1015 aa5.75□□□□□ -1.49
LIMA1-215ENST00000552823 TMEM109Q9BVC6 243 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms