RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MBLAC2Q68D91 279 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PRRT2Q7Z6L0 340 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 GSTCDQ8NEC7 633 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 CFAP61Q8NHU2 1237 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PPP1R14CQ8TAE6 165 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 AFG1LQ8WV93 481 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ARNTL2Q8WYA1 636 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MOCOSQ96EN8 888 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 QKIQ96PU8 341 aaKnown RBP eCLIP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TTC1Q99614 292 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 DDX50Q9BQ39 737 aaKnown RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 C11orf84Q9BUA3 381 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 EIF2AQ9BY44 585 aaKnown RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 OXCT2Q9BYC2 517 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 MMADHCQ9H3L0 296 aaPredicted RBP7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ACSS2Q9NR19 701 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PNPOQ9NVS9 261 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 SEPT10Q9P0V9 454 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 TAGLN3Q9UI15 199 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PPM1HQ9ULR3 514 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 C2CD2Q9Y426 696 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 PLXNB2O15031 1838 aa7.73□□□□□ -1.17
LIMA1-213ENST00000552720 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SPECC1L-ADORA2AF8WAN1 911 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 USP12O75317 370 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 TM7SF2O76062 418 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 BAG2O95816 211 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ERVK-10P10266 1014 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 CPOXP36551 454 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SLC26A2P50443 739 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MRPS35P82673 323 aaKnown RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PDE1BQ01064 536 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 AP1B1Q10567 949 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 CBLBQ13191 982 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SEMA5AQ13591 1074 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 TTLL4Q14679 1199 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PCLAFQ15004 111 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 STILQ15468 1287 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 CMPK2Q5EBM0 449 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 THEMIS2Q5TEJ8 643 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 C1orf146Q5VVC0 180 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MTHFD1LQ6UB35 978 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MAMDC4Q6UXC1 1216 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PACS1Q6VY07 963 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ARMCX2Q7L311 632 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 CMC1Q7Z7K0 106 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SESTD1Q86VW0 696 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 C10orf107Q8IVU9 208 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 COLGALT1Q8NBJ5 622 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SLC16A10Q8TF71 515 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 HTR3CQ8WXA8 447 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 LRRC39Q96DD0 335 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MTBPQ96DY7 904 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 FRMD8Q9BZ67 464 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PPP1R12CQ9BZL4 782 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 CDHR5Q9HBB8 845 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 GOLGA2P5Q9HBQ8 144 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 XPNPEP3Q9NQH7 507 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SYBUQ9NX95 663 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MKS1Q9NXB0 559 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 TMEM216Q9P0N5 145 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 LRCH1Q9Y2L9 728 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 USP3Q9Y6I4 520 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 TSC2P49815 1807 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MYLKQ15746 1914 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 A0A088AWK7 358 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 A8MXQ7 604 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MAGEC1O60732 1142 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ZMPSTE24O75844 475 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 UBTFL6P0CB48 400 aaPredicted RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ANPEPP15144 967 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 AKAP5P24588 427 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PSMB4P28070 264 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 MLH1P40692 756 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ADCYAP1R1P41586 468 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SLC1A6P48664 564 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PGGT1BP53609 377 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 NIPAL4Q0D2K0 466 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 ZNF484Q5JVG2 852 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 FOXB2Q5VYV0 432 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 DPY19L2Q6NUT2 758 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 TRIM42Q8IWZ5 723 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 PIWIL2Q8TC59 973 aaKnown RBP7.72□□□□□ -1.17
LIMA1-213ENST00000552720 AZIN2Q96A70 460 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 SORT1Q99523 831 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 THAP1Q9NVV9 213 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 KLK14Q9P0G3 267 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 KIAA1257Q9ULG3 409 aa7.72□□□□□ -1.17
LIMA1-213ENST00000552720 RNF103O00237 685 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 SPTLC1O15269 473 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 PLIN3O60664 434 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 DGKIO75912 1065 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 PDE5AO76074 875 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 DDNO94850 711 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 AMHP03971 560 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 SERPINA6P08185 405 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 CYP2C8P10632 490 aa7.71□□□□□ -1.17
LIMA1-213ENST00000552720 IGFBP6P24592 240 aaPredicted RBP7.71□□□□□ -1.17
LIMA1-213ENST00000552720 TKTP29401 623 aaKnown RBP7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms