RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 SND1Q7KZF4 910 aaKnown RBP eCLIP9.93□□□□□ -0.82
YBX3-211ENST00000541351 DIS3L2Q8IYB7 885 aaKnown RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 EFCAB3Q8N7B9 438 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 ZNF557Q8N988 423 aaPredicted RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 C9orf43Q8TAL5 461 aaPredicted RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 KCNB2Q92953 911 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 GLMNQ92990 594 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 PRR11Q96HE9 360 aaPredicted RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 PIWIL1Q96J94 861 aaKnown RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 HEXIM2Q96MH2 286 aaKnown RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 TMEM245Q9H330 911 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 DMAP1Q9NPF5 467 aaPredicted RBP9.93□□□□□ -0.82
YBX3-211ENST00000541351 DKK3Q9UBP4 350 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 PHTF1Q9UMS5 762 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 PLAAQ9Y263 795 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 CYP46A1Q9Y6A2 500 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 MYH10P35580 1976 aa9.93□□□□□ -0.82
YBX3-211ENST00000541351 TP53BP1Q12888 1972 aaPredicted RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 UBE4BO95155 1302 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 GREM1O60565 184 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 RNGTTO60942 597 aaKnown RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 LDHAP00338 332 aaKnown RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 PDGFRBP09619 1106 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 ZDHHC11BP0C7U3 371 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 TRIM21P19474 475 aaKnown RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 LMO2P25791 158 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 CD82P27701 267 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 GNL1P36915 607 aaPredicted RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 RPIAP49247 311 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 SLC5A3P53794 718 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 POLE2P56282 527 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 ST8SIA6P61647 398 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 COG7P83436 770 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 SPIDRQ14159 915 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 CCDC142Q17RM4 750 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 FYB2Q5VWT5 728 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 ZCCHC8Q6NZY4 707 aaKnown RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 RUFY3Q7L099 469 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 MAMDC2Q7Z304 686 aaPredicted RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 HEATR4Q86WZ0 1026 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 SLC25A45Q8N413 288 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 FBXO39Q8N4B4 442 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 C1orf127Q8N9H9 656 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 DDI1Q8WTU0 396 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 POMGNT1Q8WZA1 660 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 KLHDC7BQ96G42 594 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 ANKRD36BP1Q96IX9 119 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 RSPH9Q9H1X1 276 aaPredicted RBP9.92□□□□□ -0.82
YBX3-211ENST00000541351 PARVGQ9HBI0 331 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 PRSS16Q9NQE7 514 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 KLHL11Q9NVR0 708 aa9.92□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3DA0A087WVF3 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3IA0A087WXS9 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3EA0A087X179 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3KA0A087X1G2 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 FAM92AA1XBS5 289 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3FA6NER0 549 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3LB9A6J9 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 NVLO15381 856 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 FAM13AO94988 1023 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 DLDP09622 509 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 PRR29P0C7W0 189 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3HP0C7X1 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 JMJD7P0C870 316 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 PTPN1P18031 435 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 PSEN1P49768 467 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 KLRB1Q12918 225 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 ZNF177Q13360 481 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 TOB2Q14106 344 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 CLCA4Q14CN2 919 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 BMT2Q1RMZ1 405 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 KMT5BQ4FZB7 885 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 SETMARQ53H47 684 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3GQ6DHY5 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3CQ6IPX1 549 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 Q6ZNB5 142 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 ZC3H18Q86VM9 953 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 SPATS2Q86XZ4 545 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 SRRM1Q8IYB3 904 aaKnown RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 TBC1D3Q8IZP1 549 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 SLC34A3Q8N130 599 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 AHI1Q8N157 1196 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 MYCT1Q8N699 235 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 SYT2Q8N9I0 419 aaPredicted RBP9.91□□□□□ -0.82
YBX3-211ENST00000541351 OR6B3Q8NGW1 331 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 OR14C36Q8NHC7 312 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 NAT6Q93015 286 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 IFT43Q96FT9 208 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 SMARCD1Q96GM5 515 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 HPDLQ96IR7 371 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 CDK5RAP3Q96JB5 506 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 FUCA2Q9BTY2 467 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 GJB4Q9NTQ9 266 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 IL37Q9NZH6 218 aa9.91□□□□□ -0.82
YBX3-211ENST00000541351 CENPEQ02224 2701 aa9.9□□□□□ -0.82
YBX3-211ENST00000541351 A0A1W2PP55 124 aa9.9□□□□□ -0.82
YBX3-211ENST00000541351 SLC12A8A0AV02 714 aa9.9□□□□□ -0.82
YBX3-211ENST00000541351 PRAMEF26H0Y7S4 382 aa9.9□□□□□ -0.82
YBX3-211ENST00000541351 SCAMP1O15126 338 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms