RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 RARAP10276 462 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 DESP17661 470 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 CTNNA2P26232 953 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 GGCXP38435 758 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 MTHFRP42898 656 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 PEX5P50542 639 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 ETF1P62495 437 aaKnown RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 COG7P83436 770 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 HADHQ16836 314 aaKnown RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 MIA3Q5JRA6 1907 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 ERMARDQ5T6L9 678 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 SND1Q7KZF4 910 aaKnown RBP eCLIP9.69□□□□□ -0.86
DDX55-208ENST00000541259 ARID3BQ8IVW6 561 aaPredicted RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 RHOT1Q8IXI2 618 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 PYROXD2Q8N2H3 581 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 ZSCAN18Q8TBC5 510 aaPredicted RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 SUSD6Q92537 303 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 HSPH1Q92598 858 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 ALG3Q92685 438 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 USP13Q92995 863 aaPredicted RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 RSPRY1Q96DX4 576 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 HES6Q96HZ4 224 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 LRRC3BQ96PB8 259 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 SNRNP25Q9BV90 132 aaKnown RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 PRDM6Q9NQX0 595 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.69□□□□□ -0.86
DDX55-208ENST00000541259 ARHGEF38Q9NXL2 777 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 DNAI1Q9UI46 699 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 HBS1LQ9Y450 684 aaKnown RBP9.69□□□□□ -0.86
DDX55-208ENST00000541259 PCDHA3Q9Y5H8 950 aa9.69□□□□□ -0.86
DDX55-208ENST00000541259 SHROOM3Q8TF72 1996 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 TCF20Q9UGU0 1960 aaKnown RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 GOLGA6L7A0A1B0GV03 622 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 SOBPA7XYQ1 873 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 PI4K2BG5E9Z4 385 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 FAM72CH0Y354 149 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 MBTPS2O43462 519 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 ZNF500O60304 480 aaPredicted RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 PAGE1O75459 146 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 CD48P09326 243 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 PFKLP17858 780 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 SP100P23497 879 aaPredicted RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 CORO1AP31146 461 aaKnown RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 L1CAMP32004 1257 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 CCR1P32246 355 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 GBP2P32456 591 aaPredicted RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 CTNNA1P35221 906 aaKnown RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 AVPR1AP37288 418 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 VIPR2P41587 438 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 NNTQ13423 1086 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 PPP2R5DQ14738 602 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 RPS6KA1Q15418 735 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 FAM78AQ5JUQ0 283 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 ARTNQ5T4W7 220 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 FAM72AQ5TYM5 149 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 DCAF12L1Q5VU92 463 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 FAM72DQ6L9T8 149 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 AADACL2Q6P093 401 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 ANKS1BQ7Z6G8 1248 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 C14orf80Q86SX3 495 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 FAM72BQ86X60 149 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 DENND1CQ8IV53 801 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 SH3RF2Q8TEC5 729 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 RAPGEF5Q92565 580 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 HLA-CQ95604 372 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 PLD4Q96BZ4 506 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 KCTD15Q96SI1 283 aaPredicted RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 PSMB7Q99436 277 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 NCAPGQ9BPX3 1015 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 DHX35Q9H5Z1 703 aaKnown RBP9.68□□□□□ -0.86
DDX55-208ENST00000541259 TDP1Q9NUW8 608 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 CFAP97Q9P2B7 532 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 CDH7Q9ULB5 785 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 ARHGAP26Q9UNA1 814 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 AP4E1Q9UPM8 1137 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 JRKLQ9Y4A0 524 aa9.68□□□□□ -0.86
DDX55-208ENST00000541259 CHD5Q8TDI0 1954 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 C3orf70A6NLC5 250 aaPredicted RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 TRDMT1O14717 391 aaKnown RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 PSTPIP1O43586 416 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 APOEP02649 317 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 KRT7P08729 469 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 FCARP24071 287 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 KDELR1P24390 212 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 CASQ1P31415 396 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 SLC6A4P31645 630 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 CXCR5P32302 372 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ARSEP51690 589 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 KPNA1P52294 538 aaPredicted RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 PTPN5P54829 565 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 TFF2Q03403 129 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 RING1Q06587 406 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 SCAPQ12770 1279 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ZNF211Q13398 564 aaPredicted RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 SMAD4Q13485 552 aaKnown RBP9.67□□□□□ -0.86
DDX55-208ENST00000541259 LLGL1Q15334 1064 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 ZNF77Q15935 545 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 BOLA3Q53S33 107 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 BRMS1LQ5PSV4 323 aa9.67□□□□□ -0.86
DDX55-208ENST00000541259 PIK3R6Q5UE93 754 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms