RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 PRR23BQ6ZRT6 265 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 CACNA2D4Q7Z3S7 1137 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 XYLT1Q86Y38 959 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 ANKRD20A12PQ8NF67 263 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 WFDC5Q8TCV5 224 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 LOXL4Q96JB6 756 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 PRMT1Q99873 361 aaKnown RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 NUCKS1Q9H1E3 243 aaKnown RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 DUSP15Q9H1R2 295 aaPredicted RBP14.74□□□□□ -0.05
USP28-209ENST00000540925 PARD6AQ9NPB6 346 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 NLRC4Q9NPP4 1024 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 ELOVL2Q9NXB9 296 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 NCDNQ9UBB6 729 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 CEP83Q9Y592 693 aa14.74□□□□□ -0.05
USP28-209ENST00000540925 CEP250Q9BV73 2442 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 EPG5Q9HCE0 2579 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 DCLK1O15075 740 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 NPC1O15118 1278 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 TEX33O43247 280 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 GRAP2O75791 330 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 HOXB2P14652 356 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 CDK11BP21127 795 aaKnown RBP14.73□□□□□ -0.05
USP28-209ENST00000540925 ZNF165P49910 485 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 SNX16P57768 344 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 MS4A13Q5J8X5 152 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 OR6B2Q6IFH4 312 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 KIAA1211LQ6NV74 962 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 BNIPLQ7Z465 357 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 ADIPOR2Q86V24 386 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 IPO4Q8TEX9 1081 aaKnown RBP14.73□□□□□ -0.05
USP28-209ENST00000540925 BTN2A3PQ96KV6 586 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 NPY6RQ99463 290 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 TPSD1Q9BZJ3 242 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 POLMQ9NP87 494 aaPredicted RBP14.73□□□□□ -0.05
USP28-209ENST00000540925 RTN4Q9NQC3 1192 aaKnown RBP14.73□□□□□ -0.05
USP28-209ENST00000540925 RAB23Q9ULC3 237 aa14.73□□□□□ -0.05
USP28-209ENST00000540925 CKAP5Q14008 2032 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 TCRBV21S2A2A0A5A6 115 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 WASH3PC4AMC7 463 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 TIMM44O43615 452 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 ALDH1A2O94788 518 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 EPN2O95208 641 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 GABRG2P18507 467 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 NOS2P35228 1153 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 P2RY2P41231 377 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 STAT1P42224 750 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 MATKP42679 507 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 IL12RB1P42701 662 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 RPS24P62847 133 aaKnown RBP14.72□□□□□ -0.05
USP28-209ENST00000540925 CDK17Q00537 523 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 MAP7D1Q3KQU3 841 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 ARTNQ5T4W7 220 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 CEP68Q76N32 757 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 ARCQ7LC44 396 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 ERICH1Q86X53 443 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 CHPFQ8IZ52 775 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 GPR161Q8N6U8 529 aaKnown RBP14.72□□□□□ -0.05
USP28-209ENST00000540925 HJURPQ8NCD3 748 aaPredicted RBP14.72□□□□□ -0.05
USP28-209ENST00000540925 NEK11Q8NG66 645 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 FIBINQ8TAL6 211 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 CPA5Q8WXQ8 436 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 C18orf8Q96DM3 657 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 PGAP3Q96FM1 320 aaPredicted RBP14.72□□□□□ -0.05
USP28-209ENST00000540925 PCDHB18PQ96TA0 734 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 DDX50Q9BQ39 737 aaKnown RBP14.72□□□□□ -0.05
USP28-209ENST00000540925 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.72□□□□□ -0.05
USP28-209ENST00000540925 CACNA2D2Q9NY47 1150 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 RRN3Q9NYV6 651 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 TMEM59LQ9UK28 342 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 GMEB2Q9UKD1 530 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 STON1Q9Y6Q2 735 aa14.72□□□□□ -0.05
USP28-209ENST00000540925 A0A1B0GTH6 734 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 SYCE3A1L190 88 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 SMTNL1A8MU46 457 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 I6L893 689 aaPredicted RBP14.71□□□□□ -0.05
USP28-209ENST00000540925 TBL1XO60907 577 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 APOEP02649 317 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 UNGP13051 313 aaPredicted RBP14.71□□□□□ -0.05
USP28-209ENST00000540925 TFE3P19532 575 aaPredicted RBP14.71□□□□□ -0.05
USP28-209ENST00000540925 BCKDHBP21953 392 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 MMP8P22894 467 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 WASP42768 502 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 PTP4A2Q12974 167 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 PTPRNQ16849 979 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 USP39Q53GS9 565 aaKnown RBP14.71□□□□□ -0.05
USP28-209ENST00000540925 C2CD6Q53TS8 623 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 PLA2G2CQ5R387 149 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 NAA35Q5VZE5 725 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 PMS2CLQ68D20 193 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 TRNP1Q6NT89 227 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 ERMP1Q7Z2K6 904 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.71□□□□□ -0.05
USP28-209ENST00000540925 KIAA2013Q8IYS2 634 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 WFIKKN2Q8TEU8 576 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 HMGB4Q8WW32 186 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 SORCS1Q8WY21 1168 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 BAP1Q92560 729 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 SPAG5Q96R06 1193 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 SYT11Q9BT88 431 aa14.71□□□□□ -0.05
USP28-209ENST00000540925 TMEM245Q9H330 911 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms