RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 CXCR5P32302 372 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 GGCXP38435 758 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 HARS2P49590 506 aaKnown RBP19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ARSEP51690 589 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ZNF211Q13398 564 aaPredicted RBP19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 EFHC2Q5JST6 749 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 PSTKQ8IV42 348 aaKnown RBP19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ATP6V0D2Q8N8Y2 350 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SH3RF2Q8TEC5 729 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 RNF25Q96BH1 459 aaPredicted RBP19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 BTN2A3PQ96KV6 586 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 HAPLN3Q96S86 360 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 KCTD15Q96SI1 283 aaPredicted RBP19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 CDH7Q9ULB5 785 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SNX10Q9Y5X0 201 aa19.6■□□□□ 0.73
TNFRSF1A-213ENST00000540022 LRRD1A4D1F6 860 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM72CH0Y354 149 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 LEFTY2O00292 366 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ZRANB2O95218 330 aaKnown RBP eCLIP19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 CD48P09326 243 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 PYGMP11217 842 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 WEE1P30291 646 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 L1CAMP32004 1257 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 CDH6P55285 790 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 AMPD2Q01433 879 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 DPYSL2Q16555 572 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM72AQ5TYM5 149 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM72DQ6L9T8 149 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 AADACL2Q6P093 401 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ANKS1BQ7Z6G8 1248 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM72BQ86X60 149 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 DENND1CQ8IV53 801 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 TTC16Q8NEE8 873 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ST13P5Q8NFI4 369 aaPredicted RBP19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 EXD1Q8NHP7 514 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 RIN3Q8TB24 985 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 MYADMQ96S97 322 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 OSBPL9Q96SU4 736 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SIK2Q9H0K1 926 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 PCDH18Q9HCL0 1135 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 GDE1Q9NZC3 331 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 CFAP97Q9P2B7 532 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SLC12A6Q9UHW9 1150 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 DENND4AQ7Z401 1863 aa19.59■□□□□ 0.73
TNFRSF1A-213ENST00000540022 C3orf70A6NLC5 250 aaPredicted RBP19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SCAMP3O14828 347 aaKnown RBP19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 SRGAP2O75044 1071 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 KDELR1P24390 212 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 MS4A13Q5J8X5 152 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM78AQ5JUQ0 283 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 PIK3R6Q5UE93 754 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 NADSYN1Q6IA69 706 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 MFSD7Q6UXD7 560 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 KCTD6Q8NC69 237 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 FAM71BQ8TC56 605 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ASB16Q96NS5 453 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 NECTIN4Q96NY8 510 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 OSBPL2Q9H1P3 480 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 CARD9Q9H257 536 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 AGO1Q9UL18 857 aaKnown RBP19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 HS3ST4Q9Y661 456 aa19.58■□□□□ 0.73
TNFRSF1A-213ENST00000540022 ACSL4O60488 711 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 PRLRP16471 622 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 MLLT6P55198 1093 aaPredicted RBP19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 SEMA3BQ13214 749 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 PPP6R3Q5H9R7 873 aaPredicted RBP19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 Q6ZNB5 142 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 HTR3DQ70Z44 454 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 RCOR2Q8IZ40 523 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 KIF18AQ8NI77 898 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 COG1Q8WTW3 980 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 AZIN2Q96A70 460 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 OR12D3Q9UGF7 316 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 SH3BP1Q9Y3L3 701 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 SAR1BQ9Y6B6 198 aa19.57■□□□□ 0.72
TNFRSF1A-213ENST00000540022 GOLGA6L7A0A1B0GV03 622 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 TCF3P15923 654 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 TCP1P17987 556 aaKnown RBP19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 IL4RP24394 825 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 GBP2P32456 591 aaPredicted RBP19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 SLC11A2P49281 568 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 USP4Q13107 963 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 MMRN1Q13201 1228 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 MTA1Q13330 715 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 DPYSL3Q14195 570 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 KRT81Q14533 505 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 PDK2Q15119 407 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 LLGL1Q15334 1064 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 ZNF77Q15935 545 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 ODF2Q5BJF6 829 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 ARTNQ5T4W7 220 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 RAP1GAP2Q684P5 730 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 C14orf80Q86SX3 495 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 DDX42Q86XP3 938 aaKnown RBP eCLIP19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 SMARCD2Q92925 531 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 RSPRY1Q96DX4 576 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 RBM41Q96IZ5 413 aaKnown RBP19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 C1orf74Q96LT6 269 aa19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 PRMT1Q99873 361 aaKnown RBP19.56■□□□□ 0.72
TNFRSF1A-213ENST00000540022 PHF7Q9BWX1 381 aaPredicted RBP19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms