RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 GRK2P25098 689 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CIITAP33076 1130 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SERPINB9P50453 376 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CCT8P50990 548 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FMO1Q01740 532 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TAP1Q03518 808 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ADCY1Q08828 1119 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FAAP100Q0VG06 881 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PDIA2Q13087 525 aaKnown RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 ORC1Q13415 861 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CCNIQ14094 377 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SPCS2Q15005 226 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TNIP1Q15025 636 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 MOGQ16653 247 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 AOC3Q16853 763 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ZBED5Q49AG3 693 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 KCTD21Q4G0X4 260 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TEDDM1Q5T9Z0 273 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ANGEL2Q5VTE6 544 aaKnown RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 GJB7Q6PEY0 223 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 C16orf89Q6UX73 402 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 C4orf22Q6V702 233 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 GALNT12Q8IXK2 581 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PDIK1LQ8N165 341 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 RIN3Q8TB24 985 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ACMSDQ8TDX5 336 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SLC26A7Q8TE54 656 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 GIPC3Q8TF64 312 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TRUB1Q8WWH5 349 aaKnown RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 SLC44A1Q8WWI5 657 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PRPF31Q8WWY3 499 aaKnown RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 TOP1MTQ969P6 601 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ANKRD36BP1Q96IX9 119 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CCDC138Q96M89 665 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PIGSQ96S52 555 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FAM129BQ96TA1 746 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PAFAH2Q99487 392 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 DOK1Q99704 481 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TUBA1CQ9BQE3 449 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 STRA6Q9BX79 667 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 FGFBP2Q9BYJ0 223 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ZNF341Q9BYN7 854 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 BHLHE41Q9C0J9 482 aaPredicted RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 NIF3L1Q9GZT8 377 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 HIPK3Q9H422 1215 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 KANSL2Q9H9L4 492 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PARVGQ9HBI0 331 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CD209Q9NNX6 404 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 UBE2TQ9NPD8 197 aaPredicted RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 FBXO6Q9NRD1 293 aaPredicted RBP6.91□□□□□ -1.3
USP28-207ENST00000538475 INIPQ9NRY2 104 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PNPLA3Q9NST1 481 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 DNAJC28Q9NX36 388 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 STK39Q9UEW8 545 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 CDH22Q9UJ99 828 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ADAMTS6Q9UKP5 1117 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ARHGAP26Q9UNA1 814 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 SLC8A2Q9UPR5 921 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 POMPQ9Y244 141 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 PLLPQ9Y342 182 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 ZNF711Q9Y462 761 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 TTLL3Q9Y4R7 772 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 AP4B1Q9Y6B7 739 aa6.91□□□□□ -1.3
USP28-207ENST00000538475 A0A087WXM4 84 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 GOLGA8QA0A0J9YX86 632 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 DENND3A2RUS2 1198 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 GOLGA8OA6NCC3 632 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 ARHGAP42A6NI28 874 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 FAM155AB1AL88 458 aaPredicted RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 GOLGA8NF8WBI6 632 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 KPNA4O00629 521 aaPredicted RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 TXNDC9O14530 226 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 SLC22A1O15245 554 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 DKC1O60832 514 aaKnown RBP eCLIP6.9□□□□□ -1.3
USP28-207ENST00000538475 CNOT3O75175 753 aaKnown RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 MED24O75448 989 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 PGM3O95394 542 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 H6PDO95479 791 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 SERPINB2P05120 415 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 INHBAP08476 426 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 SNRPAP09012 282 aaKnown RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 RALAP11233 206 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 CYP19A1P11511 503 aaPredicted RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 RAG1P15918 1043 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 PSMC3P17980 439 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 CDH3P22223 829 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 ITGB7P26010 798 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 PEX2P28328 305 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 L1CAMP32004 1257 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 CRHR1P34998 444 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 TNNI2P48788 182 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 GPC3P51654 580 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 VAMP7P51809 220 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 CASP5P51878 434 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 NLRP11P59045 1033 aaKnown RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 RPS3AP61247 264 aaKnown RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 ATP6V0D1P61421 351 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 ZNF200P98182 395 aaPredicted RBP6.9□□□□□ -1.3
USP28-207ENST00000538475 MYBPC1Q00872 1141 aa6.9□□□□□ -1.3
USP28-207ENST00000538475 SPIRE1Q08AE8 756 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms