RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 AMPD1P23109 780 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ACAT1P24752 427 aaKnown RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 FOXN2P32314 431 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ADRA1BP35368 520 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 THPOP40225 353 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PSEN1P49768 467 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SCNN1GP51170 649 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CLCNKBP51801 687 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NEK3P51956 506 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ATXN1P54253 815 aaKnown RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 PPARDQ03181 441 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CDK18Q07002 472 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 AP1B1Q10567 949 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 BNIP1Q12981 228 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SEMA3BQ13214 749 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NME3Q13232 169 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PRPSAP1Q14558 356 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DSC3Q14574 896 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SLC1A5Q15758 541 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SNCBQ16143 134 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 GALNTL6Q49A17 601 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 FAM26DQ5JW98 314 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SPANXN3Q5MJ09 141 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 BRMS1LQ5PSV4 323 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 STXBP5Q5T5C0 1151 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 OTUD1Q5VV17 481 aaPredicted RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 ATG16L1Q676U5 607 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CYB5D1Q6P9G0 228 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CXCL17Q6UXB2 119 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 UNC5AQ6ZN44 842 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 AGMOQ6ZNB7 445 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TIFABQ6ZNK6 161 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DENND5BQ6ZUT9 1274 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PACS2Q86VP3 889 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PLCD3Q8N3E9 789 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TAB3Q8N5C8 712 aaPredicted RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 PPM1NQ8N819 430 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 COLGALT1Q8NBJ5 622 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SMC1BQ8NDV3 1235 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TRPV1Q8NER1 839 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TCP10LQ8TDR4 215 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TRIB2Q92519 343 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ZNF75CPQ92670 426 aaPredicted RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 ATP2A3Q93084 1043 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 MYLPFQ96A32 169 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 HDAC11Q96DB2 347 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 MRRFQ96E11 262 aaKnown RBP6.83□□□□□ -1.32
USP28-206ENST00000538224 P2RY11Q96G91 374 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PCED1BQ96HM7 432 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SIGLEC10Q96LC7 697 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 LRRC37BQ96QE4 947 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 LPIN3Q9BQK8 851 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 SIKE1Q9BRV8 207 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TRIM55Q9BYV6 548 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 KIF9Q9HAQ2 790 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 CRTAC1Q9NQ79 661 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 KLC4Q9NSK0 619 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 ABCF3Q9NUQ8 709 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DDIT4Q9NX09 232 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NSMCE4AQ9NXX6 385 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 DONSONQ9NYP3 566 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.83□□□□□ -1.32
USP28-206ENST00000538224 FNIP2Q9P278 1114 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 TXNDC16Q9P2K2 825 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 FBXW11Q9UKB1 542 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 PADI3Q9ULW8 664 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 NOD1Q9Y239 953 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 MAD1L1Q9Y6D9 718 aa6.83□□□□□ -1.32
USP28-206ENST00000538224 MAGEB16A2A368 324 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 MYADML2A6NDP7 307 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CASTOR2A6NHX0 329 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 TRIM49D1C9J1S8 452 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 TMEM189-UBE2V1I3L0A0 370 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CLDN5O00501 218 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 C2CD2LO14523 706 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CHUKO15111 745 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 BIRC5O15392 142 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CREB3O43889 395 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 ATP2C2O75185 946 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 GLRA3O75311 464 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 EOMESO95936 686 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 PGK1P00558 417 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 ASGR1P07306 291 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 DHRS4L1P0CG22 281 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 SRGAP2BP0DMP2 458 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 PYGBP11216 843 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CCNB1P14635 433 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 VAV1P15498 845 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 ADRA1DP25100 572 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 HNRNPH1P31943 449 aaKnown RBP6.82□□□□□ -1.32
USP28-206ENST00000538224 SLC8A1P32418 973 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CRHR1P34998 444 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 CXCR3P49682 368 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 PPIDQ08752 370 aaKnown RBP6.82□□□□□ -1.32
USP28-206ENST00000538224 FAAP100Q0VG06 881 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 SLC10A2Q12908 348 aaPredicted RBP6.82□□□□□ -1.32
USP28-206ENST00000538224 MTA1Q13330 715 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 RIPK1Q13546 671 aa6.82□□□□□ -1.32
USP28-206ENST00000538224 FAM133BQ5BKY9 247 aaKnown RBP6.82□□□□□ -1.32
USP28-206ENST00000538224 ACBD5Q5T8D3 534 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms