RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 LMF1Q96S06 567 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 GTPBP2Q9BX10 602 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 SPZ1Q9BXG8 430 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 LRRC2Q9BYS8 371 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 SEMA4CQ9C0C4 833 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 UNC45AQ9H3U1 944 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 NXF3Q9H4D5 531 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 EPB41L1Q9H4G0 881 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 RIC8AQ9NPQ8 531 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 AGPAT5Q9NUQ2 364 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 MYOTQ9UBF9 498 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 STK39Q9UEW8 545 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 SEC63Q9UGP8 760 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 TMEFF2Q9UIK5 374 aaPredicted RBP3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 C2orf16Q68DN1 1984 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 MYO9AB2RTY4 2548 aa3.28□□□□□ -1.88
CHMP4A-208ENST00000534106 FLNCQ14315 2725 aa3.28□□□□□ -1.89
CHMP4A-208ENST00000534106 PTPRQQ9UMZ3 2332 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ATXN2Q99700 1313 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CNTNAP2Q9UHC6 1331 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 DENND4AQ7Z401 1863 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CCDC194A0A1B0GVG4 234 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 PCNX2A6NKB5 2137 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 E7EWF7 191 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 PRRG1O14668 218 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 PTGESO14684 152 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CHADO15335 359 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TSPAN1O60635 241 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TADA3O75528 432 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 SOAT2O75908 522 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 NPTXRO95502 500 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CPP00450 1065 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 C1RP00736 705 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CYP21A2P08686 494 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 FTH1P19P0C7X4 201 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CD59P13987 128 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 HNRNPLP14866 589 aaKnown RBP eCLIP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ENGP17813 658 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 HOXA9P31269 272 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 SREBF1P36956 1147 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 GLRBP48167 497 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 DNM2P50570 870 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 DGKEP52429 567 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 NAPAP54920 295 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 KRTAP1-1Q07627 177 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ABHD18Q0P651 414 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 LAMTOR4Q0VGL1 99 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TRIP6Q15654 476 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ELF2Q15723 593 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 NAB2Q15742 525 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 USP39Q53GS9 565 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CYP4A22Q5TCH4 519 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 PDZD4Q76G19 769 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 GPR155Q7Z3F1 870 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ARID3BQ8IVW6 561 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CCDC103Q8IW40 242 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 SFTPA1Q8IWL2 248 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TRIM48Q8IWZ4 208 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ABCA7Q8IZY2 2146 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CCDC33Q8N5R6 958 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 NUDT10Q8NFP7 164 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CTCFLQ8NI51 663 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 PHOSPHO1Q8TCT1 267 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CRYGNQ8WXF5 182 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 LENG9Q96B70 501 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ANAPC16Q96DE5 110 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 NUDT11Q96G61 164 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 MRGPRX3Q96LB0 322 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 FNBP1Q96RU3 617 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 IER2Q9BTL4 223 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 INO80BQ9C086 356 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 FZD8Q9H461 694 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 SLC32A1Q9H598 525 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 C8orf33Q9H7E9 229 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TRPV4Q9HBA0 871 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 CYP4F11Q9HBI6 524 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ZDHHC4Q9NPG8 344 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TRPV5Q9NQA5 729 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 DLL4Q9NR61 685 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 GKN1Q9NS71 199 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TBC1D22BQ9NU19 505 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 WRAP73Q9P2S5 460 aaPredicted RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ADAM29Q9UKF5 820 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ZFR2Q9UPR6 939 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 COL4A3BPQ9Y5P4 624 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 KAT6AQ92794 2004 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ASCC3Q8N3C0 2202 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 SPTAN1Q13813 2472 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 TICRRQ7Z2Z1 1910 aa3.27□□□□□ -1.89
CHMP4A-208ENST00000534106 ZMYM2Q9UBW7 1377 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 SF3B1O75533 1304 aaKnown RBP eCLIP3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 NOTCH4Q99466 2003 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 ARHGEF37A1IGU5 675 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 ERICH2A1L162 156 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 INO80B-WBP1J3KQ70 363 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 ZNF197O14709 1029 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 SLC27A2O14975 620 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 TBX3O15119 743 aa3.26□□□□□ -1.89
CHMP4A-208ENST00000534106 AKAP3O75969 853 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms