RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 TOP6BLQ8N6T0 577 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 NSUN7Q8NE18 718 aaKnown RBP6.81□□□□□ -1.32
CD44-237ENST00000534082 ZNF564Q8TBZ8 553 aaPredicted RBP6.81□□□□□ -1.32
CD44-237ENST00000534082 SORCS1Q8WY21 1168 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 HPS3Q969F9 1004 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 FBXO32Q969P5 355 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 P2RY11Q96G91 374 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 ZNF274Q96GC6 653 aaPredicted RBP6.81□□□□□ -1.32
CD44-237ENST00000534082 PCED1BQ96HM7 432 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 C8orf48Q96LL4 319 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 SLC46A1Q96NT5 459 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 CIPCQ9C0C6 399 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 SGK2Q9HBY8 427 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 CRTAC1Q9NQ79 661 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 KCNG1Q9UIX4 513 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 LSM7Q9UK45 103 aaKnown RBP6.81□□□□□ -1.32
CD44-237ENST00000534082 CDH9Q9ULB4 789 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 AGAP1Q9UPQ3 857 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 DNM3Q9UQ16 869 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 SLC27A6Q9Y2P4 619 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 SNX9Q9Y5X1 595 aa6.81□□□□□ -1.32
CD44-237ENST00000534082 SETD2Q9BYW2 2564 aaPredicted RBP6.81□□□□□ -1.32
CD44-237ENST00000534082 ARID1BQ8NFD5 2236 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 PMS2P1A4D2B8 440 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 FAM47DPA6NHR8 397 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 CDRT15L2A8MXV6 281 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 H0YCG3 227 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 WNT9AO14904 365 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 CYP26A1O43174 497 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 LZTS3O60299 673 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 GJB6O95452 261 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 DNTTP04053 509 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 PLCG1P19174 1290 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ELAVL4P26378 380 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 YWHAQP27348 245 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 TNFRSF8P28908 595 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 TUBP50607 506 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 DUSP3P51452 185 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 RPS14P62263 151 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 TFAMQ00059 246 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 ZBTB16Q05516 673 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ZNF211Q13398 564 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 CAMK2GQ13555 558 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 EIF4HQ15056 248 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 E2F5Q15329 346 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 TBR1Q16650 682 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ISXQ2M1V0 245 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 SOWAHAQ2M3V2 549 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.8□□□□□ -1.32
CD44-237ENST00000534082 TTC31Q49AM3 519 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 MDH1BQ5I0G3 518 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 Q6ZVU0 165 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 KCNK18Q7Z418 384 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ANKS1BQ7Z6G8 1248 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 CLEC14AQ86T13 490 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 DIS3L2Q8IYB7 885 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 LRRC52Q8N7C0 313 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 C1orf127Q8N9H9 656 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 KBTBD7Q8WVZ9 684 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 OVCA2Q8WZ82 227 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 PRR11Q96HE9 360 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 ZNF395Q9H8N7 513 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 ERVMER34-1Q9H9K5 563 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 EBF2Q9HAK2 575 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 TMEM30AQ9NV96 361 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 GEMIN8Q9NWZ8 242 aaKnown RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 ELOVL2Q9NXB9 296 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 GDAP2Q9NXN4 497 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 ORC3Q9UBD5 711 aaPredicted RBP6.8□□□□□ -1.32
CD44-237ENST00000534082 FBXO10Q9UK96 956 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 PCDHGA8Q9Y5G5 932 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 NF1P21359 2839 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 CELSR2Q9HCU4 2923 aa6.8□□□□□ -1.32
CD44-237ENST00000534082 TISP43B9A030 160 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 K7ENM7 598 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 TLR4O00206 839 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 TLR5O60602 858 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 RTN3O95197 1032 aaPredicted RBP6.79□□□□□ -1.32
CD44-237ENST00000534082 PENKP01210 267 aaPredicted RBP6.79□□□□□ -1.32
CD44-237ENST00000534082 LMO2P25791 158 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 PSMA5P28066 241 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 CASRP41180 1078 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 ARID5AQ03989 594 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 GOLGA8FQ08AF8 430 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 GOLGA8DPQ0D2H9 430 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 SRSF6Q13247 344 aaKnown RBP6.79□□□□□ -1.32
CD44-237ENST00000534082 CLCA4Q14CN2 919 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 NCAPHQ15003 741 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 HS1BP3Q53T59 392 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 SNX30Q5VWJ9 437 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 SCARA3Q6AZY7 606 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 ADALQ6DHV7 355 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 NCEH1Q6PIU2 408 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 FOXR1Q6PIV2 292 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 HS2ST1Q7LGA3 356 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 TMC6Q7Z403 805 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 SPATS2Q86XZ4 545 aaKnown RBP6.79□□□□□ -1.32
CD44-237ENST00000534082 NT5DC4Q86YG4 428 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 CCDC83Q8IWF9 413 aa6.79□□□□□ -1.32
CD44-237ENST00000534082 NUP93Q8N1F7 819 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms