RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RCAN1P53805 252 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 MAP3K7CLP57077 242 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 KRT85P78386 507 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 NFKB2Q00653 900 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PRKCEQ02156 737 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 GOLGA8FQ08AF8 430 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 GOLGA8DPQ0D2H9 430 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 DHCR24Q15392 516 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 KCNA10Q16322 511 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 NFIL3Q16649 462 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 SKIDA1Q1XH10 827 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 VMACQ2NL98 169 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CCDC58Q4VC31 144 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 VWA3BQ502W6 1294 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 SHEQ5VZ18 495 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 METTL21CQ5VZV1 264 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 HAUS3Q68CZ6 603 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 VASNQ6EMK4 673 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 RWDD4Q6NW29 188 aaKnown RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 FAM173BQ6P4H8 233 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CNKSR3Q6P9H4 555 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 C16orf54Q6UWD8 224 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 Q6ZUG5 572 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 FKBP9P1Q75LS8 142 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 AKAP14Q86UN6 197 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 SFR1Q86XK3 245 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CILP2Q8IUL8 1156 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CACNA2D3Q8IZS8 1091 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 KIRREL3Q8IZU9 778 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 ELMOD1Q8N336 334 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CSGALNACT2Q8N6G5 542 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 DTX3Q8N9I9 347 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 DNAAF3Q8N9W5 541 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 NOA1Q8NC60 698 aaKnown RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 PJA1Q8NG27 643 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 OR52K1Q8NGK4 314 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 OR8K3Q8NH51 312 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 LILRB4Q8NHJ6 448 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 AGAP11Q8TF27 550 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PYROXD1Q8WU10 500 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 USP7Q93009 1102 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 TRIM63Q969Q1 353 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 DGCR14Q96DF8 476 aaKnown RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 SLC47A1Q96FL8 570 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 FAM167AQ96KS9 214 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CEP170P1Q96L14 293 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 NLRP4Q96MN2 994 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PWWP2AQ96N64 755 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PPP1R10Q96QC0 940 aaKnown RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 RAB3IPQ96QF0 476 aaPredicted RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 PSD2Q9BQI7 771 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 ERP44Q9BS26 406 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 TMEM168Q9H0V1 697 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 LMAN2LQ9H0V9 348 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 EHD1Q9H4M9 534 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PCIF1Q9H4Z3 704 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 ARNT2Q9HBZ2 717 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 EMC7Q9NPA0 242 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 C12orf4Q9NQ89 552 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 IARS2Q9NSE4 1012 aaKnown RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 SPATA6Q9NWH7 488 aaPredicted RBP5.72□□□□□ -1.49
CD44-236ENST00000533222 UCKL1Q9NWZ5 548 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 IL37Q9NZH6 218 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 HSPBP1Q9NZL4 362 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 FNIP2Q9P278 1114 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 UVRAGQ9P2Y5 699 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CLEC4AQ9UMR7 237 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 STK38LQ9Y2H1 464 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 AFG3L2Q9Y4W6 797 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CSNK1G3Q9Y6M4 447 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PMF1-BGLAPU3KQ54 211 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 PTPN23Q9H3S7 1636 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 CUX1P39880 1505 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 UGGT2Q9NYU1 1516 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 MAP3K15Q6ZN16 1313 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 KDM3AQ9Y4C1 1321 aa5.72□□□□□ -1.49
CD44-236ENST00000533222 TOP2BQ02880 1626 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 CEMIPQ8WUJ3 1361 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 EFCAB10A6NFE3 127 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 L7N2F9 121 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 DNM1LO00429 736 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 HNRNPRO43390 633 aaKnown RBP5.71□□□□□ -1.5
CD44-236ENST00000533222 GATCO43716 136 aaKnown RBP5.71□□□□□ -1.5
CD44-236ENST00000533222 AP1G1O43747 822 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 STX6O43752 255 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 GMNNO75496 209 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 SEC24DO94855 1032 aaPredicted RBP5.71□□□□□ -1.5
CD44-236ENST00000533222 TJP3O95049 919 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 ZNF202O95125 648 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 ESRRBO95718 433 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 GNA14O95837 355 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 IL18BPO95998 194 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 FYNP06241 537 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 PCNAP12004 261 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 CKBP12277 381 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 HPGDP15428 266 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 PRKACAP17612 351 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 SDHAP31040 664 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 IFNA8P32881 189 aa5.71□□□□□ -1.5
CD44-236ENST00000533222 PCK1P35558 622 aa5.71□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms