RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 ELP3Q9H9T3 547 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 ARHGEF38Q9NXL2 777 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 USP18Q9UMW8 372 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 AKT3Q9Y243 479 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 ACKR2O00590 384 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SIN3BO75182 1162 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 COPAP53621 1224 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SLC25A11Q02978 314 aaKnown RBP14.63□□□□□ -0.07
USP48-213ENST00000529637 KRT81Q14533 505 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 TTC39BQ5VTQ0 682 aaPredicted RBP14.63□□□□□ -0.07
USP48-213ENST00000529637 FRMD7Q6ZUT3 714 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 BBS12Q6ZW61 710 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 MIPOL1Q8TD10 442 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 GPATCH2LQ9NWQ4 482 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 NDUFA13Q9P0J0 144 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 PCDHGC3Q9UN70 934 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 ZNF232Q9UNY5 417 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 DNAJC16Q9Y2G8 782 aa14.63□□□□□ -0.07
USP48-213ENST00000529637 SF3B1O75533 1304 aaKnown RBP eCLIP14.63□□□□□ -0.073e-6■■■■■ 49.3
USP48-213ENST00000529637 HMX2A2RU54 273 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 LACTBL1A8MY62 500 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 SUPT3HO75486 399 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 MICAL2O94851 1124 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 ITGAXP20702 1163 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 STX3Q13277 289 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 C15orf59Q2T9L4 293 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 GJC2Q5T442 439 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 JADE1Q6IE81 842 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 KLHL35Q6PF15 583 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 TRIM67Q6ZTA4 783 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 KBTBD6Q86V97 674 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 TRIM42Q8IWZ5 723 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 NDUFAF2Q8N183 169 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 PHTF2Q8N3S3 785 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 C1orf127Q8N9H9 656 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 TFB1MQ8WVM0 346 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 MPHOSPH6Q99547 160 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 GPR20Q99678 358 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 SDCBP2Q9H190 292 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 XAB2Q9HCS7 855 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 TTLL3Q9Y4R7 772 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 SETSIPP0DME0 302 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 TXNP10599 105 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 PDGFRAP16234 1089 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 PPP6R3Q5H9R7 873 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 RIOX2Q8IUF8 465 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 MARVELD2Q8N4S9 558 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 FAF2Q96CS3 445 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 MRPL1Q9BYD6 325 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 CIDEBQ9UHD4 219 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 BOLA2-SMG1P6H3BVE0 249 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 GPR25O00155 361 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 CRTAMO95727 393 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 BPGMP07738 259 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 SNRPAP09012 282 aaKnown RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 STAG3L1P0CL83 205 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 CSH1P0DML2 217 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 CSH2P0DML3 217 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 TGFB3P10600 412 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 GMPRP36959 345 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 SH3BGRP55822 239 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 COG7P83436 770 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 ROR1Q01973 937 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 CYLC2Q14093 348 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 KCTD2Q14681 263 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 RAB6CQ53S08 254 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 C6orf52Q5T4I8 152 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 OGFRL1Q5TC84 451 aaPredicted RBP14.62□□□□□ -0.07
USP48-213ENST00000529637 POTEAQ6S8J7 498 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 XYLT1Q86Y38 959 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 ADGRF2Q8IZF7 708 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 RAB6CQ9H0N0 254 aa14.62□□□□□ -0.07
USP48-213ENST00000529637 NDC80O14777 642 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 CASQ2O14958 399 aaPredicted RBP14.61□□□□□ -0.07
USP48-213ENST00000529637 PRPSAP2O60256 369 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 USP2O75604 605 aaPredicted RBP14.61□□□□□ -0.07
USP48-213ENST00000529637 KCNA4P22459 653 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 ATXN3P54252 364 aaPredicted RBP14.61□□□□□ -0.07
USP48-213ENST00000529637 RPL10AP62906 217 aaKnown RBP14.61□□□□□ -0.07
USP48-213ENST00000529637 PDK1Q15118 436 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 TSHZ1Q6ZSZ6 1077 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 CCDC33Q8N5R6 958 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 NIPA2Q8N8Q9 360 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 ACTRT2Q8TDY3 377 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 ELOVL4Q9GZR5 314 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 RAB6BQ9NRW1 208 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 PNPOQ9NVS9 261 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 ASNSD1Q9NWL6 643 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 SIX4Q9UIU6 781 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 GSRP00390 522 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 ARRB2P32121 409 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 WASHC5Q12768 1159 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 TRMT10BQ6PF06 316 aaKnown RBP14.61□□□□□ -0.07
USP48-213ENST00000529637 AMIGO2Q86SJ2 522 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 SLC4A11Q8NBS3 891 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 TMEM176AQ96HP8 235 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 BTBD9Q96Q07 612 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 AP4B1Q9Y6B7 739 aa14.61□□□□□ -0.07
USP48-213ENST00000529637 A0A087WZ62 844 aa14.6□□□□□ -0.07
USP48-213ENST00000529637 B4GALT4O60513 344 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms