RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 APOPT1Q96IL0 206 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 WDR24Q96S15 920 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 EIF3CQ99613 913 aaKnown RBP3.63□□□□□ -1.83
CD44-229ENST00000528672 MACROD1Q9BQ69 325 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 MECRQ9BV79 373 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 CCDC68Q9H2F9 335 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SMYD2Q9NRG4 433 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ANKEF1Q9NU02 776 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 NKIRAS2Q9NYR9 191 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 KCNE5Q9UJ90 142 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 HSF4Q9ULV5 492 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SLC27A6Q9Y2P4 619 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 UTP18Q9Y5J1 556 aaKnown RBP eCLIP3.63□□□□□ -1.83
CD44-229ENST00000528672 HS3ST3A1Q9Y663 406 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 SPATA31A3Q5VYP0 1347 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 ADGRA2Q96PE1 1338 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 COL15A1P39059 1388 aa3.63□□□□□ -1.83
CD44-229ENST00000528672 TRGV11A0A075B6L2 103 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 M0QZQ0 153 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 TRIAP1O43715 76 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 GUCY1B2O75343 617 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 PDE8BO95263 885 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CSF1P09603 554 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 VDRP11473 427 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CD19P15391 556 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 ALOX12P18054 663 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 TGM1P22735 817 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CD6P30203 668 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 HOXD12P35452 270 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 KRT20P35900 424 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 STAT1P42224 750 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CCT4P50991 539 aaKnown RBP3.62□□□□□ -1.83
CD44-229ENST00000528672 PDE6CP51160 858 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 TIAL1Q01085 375 aaKnown RBP eCLIP3.62□□□□□ -1.83
CD44-229ENST00000528672 DEUP1Q05D60 604 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 NEXNQ0ZGT2 675 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 FHL2Q14192 279 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CLCA4Q14CN2 919 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 NFIL3Q16649 462 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 TMEM196Q5HYL7 178 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 ZNF484Q5JVG2 852 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CC2D1BQ5T0F9 858 aaKnown RBP3.62□□□□□ -1.83
CD44-229ENST00000528672 MFSD4BQ5TF39 518 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 MSANTD2Q6P1R3 559 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 TMTC3Q6ZXV5 915 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CPLX4Q7Z7G2 160 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 MRGPRGQ86SM5 289 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 ARHGEF19Q8IW93 802 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 ABRAQ8N0Z2 381 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 FAM109AQ8N4B1 249 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 LRRC71Q8N4P6 559 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 NGEFQ8N5V2 710 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 FAM71DQ8N9W8 422 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 GPR150Q8NGU9 434 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 PROKR1Q8TCW9 393 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 SLC22A17Q8WUG5 538 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 OSCP1Q8WVF1 389 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 RBM17Q96I25 401 aaKnown RBP3.62□□□□□ -1.83
CD44-229ENST00000528672 REXO5Q96IC2 774 aaKnown RBP3.62□□□□□ -1.83
CD44-229ENST00000528672 COQ10AQ96MF6 247 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 C17orf80Q9BSJ5 609 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 GHITMQ9H3K2 345 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 SERHL2Q9H4I8 314 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 PRDM13Q9H4Q3 707 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 RMI1Q9H9A7 625 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 PLEKHA2Q9HB19 425 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 IL17RBQ9NRM6 502 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 HAUS2Q9NVX0 235 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 RNF181Q9P0P0 153 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 CNOT7Q9UIV1 285 aaKnown RBP3.62□□□□□ -1.83
CD44-229ENST00000528672 ZBTB1Q9Y2K1 713 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 PCDHB7Q9Y5E2 793 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 NOX1Q9Y5S8 564 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 COL4A3Q01955 1670 aa3.62□□□□□ -1.83
CD44-229ENST00000528672 RSF1Q96T23 1441 aaPredicted RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 MYADML2A6NDP7 307 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 SLC38A8A6NNN8 435 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 B4DLN1 442 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 M0QYT0 321 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PEX12O00623 359 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 CA12O43570 354 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PLOD3O60568 738 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 CBFA2T3O75081 653 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 WDR47O94967 919 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 SLC3A2P08195 630 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 CYP21A2P08686 494 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 HSPA1AP0DMV8 641 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 HSPA1BP0DMV9 641 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 DRD1P21728 446 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 HTR7P34969 479 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 PBX1P40424 430 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 RPS7P62081 194 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 GUCY1B3Q02153 619 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 RNASELQ05823 741 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 KLF10Q13118 480 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 CAMK1Q14012 370 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 DCTN1Q14203 1278 aa3.61□□□□□ -1.83
CD44-229ENST00000528672 EIF4A2Q14240 407 aaKnown RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 HLXQ14774 488 aaPredicted RBP3.61□□□□□ -1.83
CD44-229ENST00000528672 ACOX1Q15067 660 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms