RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 BCCIPQ9P287 314 aaKnown RBP eCLIP19.55■□□□□ 0.72
VPS28-207ENST00000526977 A0A1W2PQH9 124 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 ERICH4A6NGS2 130 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 DNALI1O14645 258 aaPredicted RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 DEUP1Q05D60 604 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 CAMK1Q14012 370 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 KRT81Q14533 505 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 TAF12Q16514 161 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 CA9Q16790 459 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 KDM7AQ6ZMT4 941 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 PDZD8Q8NEN9 1154 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 UHMK1Q8TAS1 419 aaKnown RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 SLC7A14Q8TBB6 771 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 RNF139Q8WU17 664 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 MYRFLQ96LU7 910 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 SNRNP25Q9BV90 132 aaKnown RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 NMUR1Q9HB89 426 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 PCDH9Q9HC56 1237 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 INSL5Q9Y5Q6 135 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 SHOX2O60902 331 aaPredicted RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 GLUD1P00367 558 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 NR1D1P20393 614 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 ATXN1P54253 815 aaKnown RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 TWF1Q12792 350 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 TFDP2Q14188 446 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 RTL10Q7L3V2 364 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 PKNOX2Q96KN3 472 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 TMEM109Q9BVC6 243 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 PCDH18Q9HCL0 1135 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 DNAJC17Q9NVM6 304 aaKnown RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 GMIPQ9P107 970 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 FBXW11Q9UKB1 542 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 TPX2Q9ULW0 747 aaKnown RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 MAGED2Q9UNF1 606 aaPredicted RBP19.54■□□□□ 0.72
VPS28-207ENST00000526977 ASB3Q9Y575 518 aa19.54■□□□□ 0.72
VPS28-207ENST00000526977 MDM4O15151 490 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 IFNB1P01574 187 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 ZDHHC11BP0C7U3 371 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 ATP1A2P50993 1020 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 GDF10P55107 478 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 EIF3EP60228 445 aaKnown RBP19.53■□□□□ 0.72
VPS28-207ENST00000526977 ERMARDQ5T6L9 678 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 NPNTQ6UXI9 565 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 ITIH5Q86UX2 942 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 PSTKQ8IV42 348 aaKnown RBP19.53■□□□□ 0.72
VPS28-207ENST00000526977 TDHQ8IZJ6 230 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 TRMT2BQ96GJ1 504 aaKnown RBP19.53■□□□□ 0.72
VPS28-207ENST00000526977 CAPS2Q9BXY5 557 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 SLC28A3Q9HAS3 691 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 DDIT4Q9NX09 232 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 CALCOCO1Q9P1Z2 691 aa19.53■□□□□ 0.72
VPS28-207ENST00000526977 NOVA2Q9UNW9 492 aaKnown RBP19.53■□□□□ 0.72
VPS28-207ENST00000526977 TTC4O95801 387 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 HMGA1P17096 107 aaKnown RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 AIF1P55008 147 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PITX1P78337 314 aaPredicted RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 NME3Q13232 169 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 ANKRD20A8PQ5CZ79 823 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 OTUD1Q5VV17 481 aaPredicted RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 PPP2R2DQ66LE6 453 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 UNC45BQ8IWX7 931 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 ZCCHC9Q8N567 271 aaKnown RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 KREMEN2Q8NCW0 462 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 DQX1Q8TE96 717 aaKnown RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 FOXP3Q9BZS1 431 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 NKX2-4Q9H2Z4 354 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 OLA1Q9NTK5 396 aaKnown RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.52■□□□□ 0.722e-7■■■■□ 26
VPS28-207ENST00000526977 UXTQ9UBK9 157 aaPredicted RBP19.52■□□□□ 0.72
VPS28-207ENST00000526977 SPATA31D3P0C874 917 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PPP3CCP48454 512 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PGFP49763 221 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 IRAK1P51617 712 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 CLCN4P51793 760 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 KYNUQ16719 465 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 SKIDA1Q1XH10 827 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 SPATA31D4Q6ZUB0 917 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 HOOK3Q86VS8 718 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 VSIG1Q86XK7 387 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 RELL1Q8IUW5 271 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 ZNF276Q8N554 614 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PQLC3Q8N755 202 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PLD5Q8N7P1 536 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PCDH19Q8TAB3 1148 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 RSAD2Q8WXG1 361 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PSMG2Q969U7 264 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 LMAN2LQ9H0V9 348 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 SMOC2Q9H3U7 446 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 PIGVQ9NUD9 493 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 OSER1Q9NX31 292 aa19.52■□□□□ 0.72
VPS28-207ENST00000526977 TLDC2A0PJX2 215 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 IGLV3-25P01717 112 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 RBP3P10745 1247 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 L1CAMP32004 1257 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 IRS1P35568 1242 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 NOMO1Q15155 1222 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 RNASEH2BQ5TBB1 312 aaKnown RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 SNX30Q5VWJ9 437 aa19.51■□□□□ 0.71
VPS28-207ENST00000526977 DNAJB7Q7Z6W7 309 aaPredicted RBP19.51■□□□□ 0.71
VPS28-207ENST00000526977 FAM131BQ86XD5 332 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms