RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 CIPCQ9C0C6 399 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 GOLPH3LQ9H4A5 285 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 TMEM8AQ9HCN3 771 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 PRSS16Q9NQE7 514 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 SERGEFQ9UGK8 458 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.92□□□□□ -0.02
CPSF1-201ENST00000526271 ZNF510Q9Y2H8 683 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 PCDHB9Q9Y5E1 797 aa14.92□□□□□ -0.02
CPSF1-201ENST00000526271 GOLGA6L7A0A1B0GV03 622 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 H0Y8X5 98 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 WNT9AO14904 365 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 NPC1O15118 1278 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 CMA1P23946 247 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SLC6A4P31645 630 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 CD70P32970 193 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 NDUFA8P51970 172 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 CLDN6P56747 220 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SHBQ15464 509 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SERPINA13PQ6UXR4 307 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 INTS8Q75QN2 995 aaKnown RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SMYD4Q8IYR2 804 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 ANKRD52Q8NB46 1076 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SETD7Q8WTS6 366 aaKnown RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 DDI1Q8WTU0 396 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 HNRNPLLQ8WVV9 542 aaKnown RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 EDEM1Q92611 657 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 BIRC7Q96CA5 298 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 TMEM176AQ96HP8 235 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 SLC2A11Q9BYW1 496 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 DCLK3Q9C098 648 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 LHX5Q9H2C1 402 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 CCDC86Q9H6F5 360 aaKnown RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 TM9SF3Q9HD45 589 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 INTS6Q9UL03 887 aaKnown RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 FRMD4BQ9Y2L6 1034 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 PCDHGB2Q9Y5G2 931 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 COL5A1P20908 1838 aaPredicted RBP14.91□□□□□ -0.02
CPSF1-201ENST00000526271 MGAQ8IWI9 3026 aa14.91□□□□□ -0.02
CPSF1-201ENST00000526271 CBX4O00257 560 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 ZBTB24O43167 697 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-201ENST00000526271 CALUO43852 315 aaPredicted RBP14.9□□□□□ -0.02
CPSF1-201ENST00000526271 CALCAP01258 141 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 WNT1P04628 370 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 OXTRP30559 389 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 ENPEPQ07075 957 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 GOLGA7BQ2TAP0 167 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 FAM133BQ5BKY9 247 aaKnown RBP14.9□□□□□ -0.02
CPSF1-201ENST00000526271 NADSYN1Q6IA69 706 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 CHST9Q7L1S5 443 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 GUF1Q8N442 669 aaKnown RBP14.9□□□□□ -0.02
CPSF1-201ENST00000526271 RHBDD1Q8TEB9 315 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 TFAP2BQ92481 460 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 PLD4Q96BZ4 506 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 ABCB8Q9NUT2 735 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 DKK4Q9UBT3 224 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 TSPAN16Q9UKR8 245 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 ANKRD6Q9Y2G4 727 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 SHROOM3Q8TF72 1996 aa14.9□□□□□ -0.02
CPSF1-201ENST00000526271 FLNBO75369 2602 aaKnown RBP14.9□□□□□ -0.02
CPSF1-201ENST00000526271 TRABD2BA6NFA1 517 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 SYNCRIPO60506 623 aaKnown RBP14.89□□□□□ -0.03
CPSF1-201ENST00000526271 CER1O95813 267 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 ZBED1O96006 694 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 IGLV3-27P01718 113 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 FYNP06241 537 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 CTSKP43235 329 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 CYP4F3Q08477 520 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 ADIGQ0VDE8 80 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 ADAM9Q13443 819 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 PRAMEF14Q5SWL7 426 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 BSPRYQ5W0U4 402 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 KRT39Q6A163 491 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 RFWD3Q6PCD5 774 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 TADA2BQ86TJ2 420 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 UBA3Q8TBC4 463 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 CLEC4CQ8WTT0 213 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 MRGPRX3Q96LB0 322 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 PRICKLE1Q96MT3 831 aaPredicted RBP14.89□□□□□ -0.03
CPSF1-201ENST00000526271 CDK5RAP1Q96SZ6 601 aaKnown RBP14.89□□□□□ -0.03
CPSF1-201ENST00000526271 RAB20Q9NX57 234 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 APOBEC2Q9Y235 224 aaKnown RBP14.89□□□□□ -0.03
CPSF1-201ENST00000526271 COQ4Q9Y3A0 265 aa14.89□□□□□ -0.03
CPSF1-201ENST00000526271 GOLGA8CPA6NN73 597 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 RNF225M0QZC1 329 aaPredicted RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 O00370 1275 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 XPO1O14980 1071 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 FLRT2O43155 660 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 SEMA4FO95754 770 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 PABPC1P11940 636 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 GTF2H1P32780 548 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 RDXP35241 583 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 PSMC2P35998 433 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 GRIA4P48058 902 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 MXI1P50539 228 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 PMS1P54277 932 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 IL9RQ01113 521 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 KCNJ12Q14500 433 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 SMAD1Q15797 465 aaKnown RBP14.88□□□□□ -0.03
CPSF1-201ENST00000526271 MPPE1Q53F39 396 aa14.88□□□□□ -0.03
CPSF1-201ENST00000526271 MBLAC2Q68D91 279 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms