RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 N6AMT1Q9Y5N5 214 aa5.88□□□□□ -1.47
NUP54-218ENST00000515460 NUMBLQ9Y6R0 609 aa5.88□□□□□ -1.47
NUP54-218ENST00000515460 RELNP78509 3460 aa5.88□□□□□ -1.47
NUP54-218ENST00000515460 PABPN1LA6NDY0 278 aaKnown RBP5.87□□□□□ -1.47
NUP54-218ENST00000515460 TMEM191CA6NGB0 347 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TRIM64CA6NLI5 447 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 GOLGA8AA7E2F4 631 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TMEM110-MUSTN1A8MSY1 372 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 SEPT4O43236 478 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 PRKAB2O43741 272 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 NEMFO60524 1076 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ZBED4O75132 1171 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ATP6V1G1O75348 118 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 KIAA0754O94854 1291 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 SEC24DO94855 1032 aaPredicted RBP5.87□□□□□ -1.47
NUP54-218ENST00000515460 SLC8A1P32418 973 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 PTGS2P35354 604 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 SH3BGRP55822 239 aaPredicted RBP5.87□□□□□ -1.47
NUP54-218ENST00000515460 CUL3Q13618 768 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 DHCR24Q15392 516 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ATP13A4Q4VNC1 1196 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 RABL3Q5HYI8 236 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 BROXQ5VW32 411 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 MTHFD1LQ6UB35 978 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 PACS1Q6VY07 963 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 AACSQ86V21 672 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TTC30AQ86WT1 665 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ADHFE1Q8IWW8 467 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TTC30BQ8N4P2 665 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ZNF276Q8N554 614 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TRIML1Q8N9V2 468 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 SLC44A5Q8NCS7 719 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 C1orf131Q8NDD1 294 aaKnown RBP5.87□□□□□ -1.47
NUP54-218ENST00000515460 SDR42E1Q8WUS8 393 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ZBTB10Q96DT7 871 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 RBM41Q96IZ5 413 aaKnown RBP5.87□□□□□ -1.47
NUP54-218ENST00000515460 BRD8Q9H0E9 1235 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 IL1RAPL2Q9NP60 686 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 LMBRD1Q9NUN5 540 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.87□□□□□ -1.47
NUP54-218ENST00000515460 MCM9Q9NXL9 1143 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ING3Q9NXR8 418 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ADAMTS5Q9UNA0 930 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 TMX2Q9Y320 296 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 ZNF532Q9HCE3 1301 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 DOCK1Q14185 1865 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 MYH2Q9UKX2 1941 aa5.87□□□□□ -1.47
NUP54-218ENST00000515460 DMXL2Q8TDJ6 3036 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PLXNB2O15031 1838 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 FRMPD3Q5JV73 1810 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 DOCK2Q92608 1830 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 LOC285556D6RIA3 1793 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 A0A087X0B3 334 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PRSS38A1L453 326 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 FAM25EA8MYX2 175 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 LPXNO60711 386 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ZNF189O75820 626 aaPredicted RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 STC2O76061 302 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 LY86O95711 162 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PENKP01210 267 aaPredicted RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 AKR1B1P15121 316 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 BMP5P22003 454 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 HDAC4P56524 1084 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 CD69Q07108 199 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PPARAQ07869 468 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 CUL4BQ13620 913 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 SMC1AQ14683 1233 aaKnown RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 USH1GQ495M9 461 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 DCAF17Q5H9S7 520 aaPredicted RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 TLDC1Q6P9B6 456 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 OLFML1Q6UWY5 402 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 MRGPREQ86SM8 312 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 TMEM110Q86TL2 294 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 RASSF3Q86WH2 238 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 VRK3Q8IV63 474 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ITPRIPQ8IWB1 547 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ABRAQ8N0Z2 381 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 SPICE1Q8N0Z3 855 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 LCORLQ8N3X6 602 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PIK3C3Q8NEB9 887 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 MDGA1Q8NFP4 955 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 OR5M3Q8NGP4 307 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ST8SIA2Q92186 375 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 PPP2R3CQ969Q6 453 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 BBC3Q96PG8 261 aaPredicted RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 IWS1Q96ST2 819 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 TCHPQ9BT92 498 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 CRNKL1Q9BZJ0 848 aaKnown RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 BHMT2Q9H2M3 363 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 MROH8Q9H579 483 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 VCPKMTQ9H867 229 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 TTC12Q9H892 705 aaPredicted RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 ARMT1Q9H993 441 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ZNHIT6Q9NWK9 470 aaKnown RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 DDX25Q9UHL0 483 aaKnown RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 ADAM21Q9UKJ8 722 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 ANGPTL2Q9UKU9 493 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 TMA7Q9Y2S6 64 aaKnown RBP5.86□□□□□ -1.47
NUP54-218ENST00000515460 MYH13Q9UKX3 1938 aa5.86□□□□□ -1.47
NUP54-218ENST00000515460 SIPA1L1O43166 1804 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms