RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SELENONQ9NZV5 590 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 AKR1A1P14550 325 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 GCNT1Q02742 428 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 BST2Q10589 180 aaKnown RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 EFEMP1Q12805 493 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 FSCN1Q16658 493 aaKnown RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 C4orf32Q8N8J7 132 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 KRT35Q92764 455 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 ADNPQ9H2P0 1102 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 GRID1Q9ULK0 1009 aa13.48□□□□□ -0.25
TCOF1-213ENST00000514442 TMA7Q9Y2S6 64 aaKnown RBP13.48□□□□□ -0.25
TCOF1-213ENST00000514442 PSMD3O43242 534 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 MICAL2O94851 1124 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 THRAP10827 490 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CDH3P22223 829 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 YAF2Q8IY57 180 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TUBGCP5Q96RT8 1024 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 DYRK4Q9NR20 520 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 PCDHA3Q9Y5H8 950 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CNTNAP2Q9UHC6 1331 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 MATN2O00339 956 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TRMUO75648 421 aaKnown RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CHKAP35790 457 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ZFP1Q6P2D0 407 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 RFWD3Q6PCD5 774 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 SH3BP5LQ7L8J4 393 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TSPAN14Q8NG11 270 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CADM1Q9BY67 442 aaKnown RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CEP41Q9BYV8 373 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 GANQ9H2C0 597 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CHKBQ9Y259 395 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 HES2Q9Y543 173 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CDY2AQ9Y6F7 541 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CDY1Q9Y6F8 540 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ASTN2O75129 1339 aaPredicted RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 NDUFS3O75489 264 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ABHD2P08910 425 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 SPRED3Q2MJR0 410 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TMC5Q6UXY8 1006 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ENDOVQ8N8Q3 282 aaKnown RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TMEM161BQ8NDZ6 487 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 TNIP2Q8NFZ5 429 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 SLC39A10Q9ULF5 831 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF541Q9H0D2 1346 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 CLASP2O75122 1294 aaKnown RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 KCNA2P16389 499 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 STIP1P31948 543 aaKnown RBP13.47□□□□□ -0.25
TCOF1-213ENST00000514442 EXD1Q8NHP7 514 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ZNF384Q8TF68 577 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 APOPT1Q96IL0 206 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 RIPK3Q9Y572 518 aa13.47□□□□□ -0.25
TCOF1-213ENST00000514442 ALOX15P16050 662 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-213ENST00000514442 C1QBPQ07021 282 aaKnown RBP13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ADIGQ0VDE8 80 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 MPP3Q13368 585 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ZBTB41Q5SVQ8 909 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 SCUBE3Q8IX30 993 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ACTL9Q8TC94 416 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 TRPC4APQ8TEL6 797 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 KLRG1Q96E93 195 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 COX4I2Q96KJ9 171 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 HSD17B14Q9BPX1 270 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 TINF2Q9BSI4 451 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 FGFBP2Q9BYJ0 223 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 DKK3Q9UBP4 350 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 C1orf232A0A0U1RR37 186 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 PQBP1O60828 265 aaKnown RBP13.46□□□□□ -0.25
TCOF1-213ENST00000514442 DGKIO75912 1065 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 USP1O94782 785 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 CCDC130P13994 396 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 DNAJB2P25686 324 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 AKT1P31749 480 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 SPRP35270 261 aaPredicted RBP13.46□□□□□ -0.25
TCOF1-213ENST00000514442 TNFSF9P41273 254 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 CMPK2Q5EBM0 449 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 PDPK2PQ6A1A2 396 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 KIAA0319LQ8IZA0 1049 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ZCCHC9Q8N567 271 aaKnown RBP13.46□□□□□ -0.25
TCOF1-213ENST00000514442 NKX2-3Q8TAU0 364 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 SLC30A1Q9Y6M5 507 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 BCL10O95999 233 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ASLP04424 464 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 PDK2Q15119 407 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 RINLQ6ZS11 566 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ATP6V0D2Q8N8Y2 350 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 ADAM32Q8TC27 787 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 SGF29Q96ES7 293 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 SPATA17Q96L03 361 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 DNAJC16Q9Y2G8 782 aa13.46□□□□□ -0.25
TCOF1-213ENST00000514442 M0R3G1 203 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 AP3B1O00203 1094 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 ENDOD1O94919 500 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 LHX1P48742 406 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 CAPRIN1Q14444 709 aaKnown RBP13.46□□□□□ -0.26
TCOF1-213ENST00000514442 UGP2Q16851 508 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 NAPEPLDQ6IQ20 393 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 ARRDC4Q8NCT1 418 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 DCUN1D1Q96GG9 259 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 PGLYRP2Q96PD5 576 aa13.46□□□□□ -0.26
TCOF1-213ENST00000514442 CYLDQ9NQC7 956 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms