RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.09□□□□□ -0.79
RNF4-221ENST00000513643 RRN3Q9NYV6 651 aa10.09□□□□□ -0.79
RNF4-221ENST00000513643 XPO7Q9UIA9 1087 aaKnown RBP10.09□□□□□ -0.79
RNF4-221ENST00000513643 SLC8A2Q9UPR5 921 aa10.09□□□□□ -0.79
RNF4-221ENST00000513643 NPC1O15118 1278 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 TIMM44O43615 452 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 KLF8O95600 359 aaPredicted RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 APBB3O95704 486 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 HLA-FP30511 346 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 TIE1P35590 1138 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CXCR3P49682 368 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 SEC13P55735 322 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CDK17Q00537 523 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CENPCQ03188 943 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ZC3H12AQ5D1E8 599 aaKnown RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 MS4A13Q5J8X5 152 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 EOGTQ5NDL2 527 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 C10orf76Q5T2E6 689 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 EGFLAMQ63HQ2 1017 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 OR6B2Q6IFH4 312 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 RFWD3Q6PCD5 774 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 TRIM72Q6ZMU5 477 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 NUDT18Q6ZVK8 323 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ERICH1Q86X53 443 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 PHF13Q86YI8 300 aaPredicted RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 ZNF683Q8IZ20 524 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CCDC33Q8N5R6 958 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ZNF513Q8N8E2 541 aaPredicted RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 FIBINQ8TAL6 211 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 IPO4Q8TEX9 1081 aaKnown RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 GAB3Q8WWW8 586 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CPA5Q8WXQ8 436 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ZC3H10Q96K80 434 aaKnown RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 BTN2A3PQ96KV6 586 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 SPAG5Q96R06 1193 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ACOX2Q99424 681 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 NUCKS1Q9H1E3 243 aaKnown RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 ANLNQ9NQW6 1124 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 ARHGEF38Q9NXL2 777 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 AIPL1Q9NZN9 384 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 THAP10Q9P2Z0 257 aaPredicted RBP10.08□□□□□ -0.8
RNF4-221ENST00000513643 CEP83Q9Y592 693 aa10.08□□□□□ -0.8
RNF4-221ENST00000513643 CAPN9O14815 690 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 AXIN1O15169 862 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 TSPAN3O60637 253 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 GRAP2O75791 330 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 CYBBP04839 570 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 SLC2A3P11169 496 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 TFE3P19532 575 aaPredicted RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 NTSR1P30989 418 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 FLT3P36888 993 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 PRKCIP41743 596 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 PXNP49023 591 aaPredicted RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 FANCCQ00597 558 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 SRSF5Q13243 272 aaKnown RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 MTA1Q13330 715 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 EIF4HQ15056 248 aaKnown RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 CLEC16AQ2KHT3 1053 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 SLC25A52Q3SY17 297 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 C2CD6Q53TS8 623 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 NAA35Q5VZE5 725 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 E4F1Q66K89 784 aaPredicted RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 TRMT11Q7Z4G4 463 aaKnown RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 MDGA1Q8NFP4 955 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 WFDC5Q8TCV5 224 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 DDI1Q8WTU0 396 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 CENPIQ92674 756 aaPredicted RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 BHMTQ93088 406 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 TTC17Q96AE7 1141 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 HHIPQ96QV1 700 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 AGPAT1Q99943 283 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 DDX50Q9BQ39 737 aaKnown RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 TMEM245Q9H330 911 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 PIGVQ9NUD9 493 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 ELOVL2Q9NXB9 296 aa10.07□□□□□ -0.8
RNF4-221ENST00000513643 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.07□□□□□ -0.8
RNF4-221ENST00000513643 INTS6Q9UL03 887 aaKnown RBP10.07□□□□□ -0.8
RNF4-221ENST00000513643 CACNA1AO00555 2505 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 GON4LQ3T8J9 2241 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 A0A1W2PQJ5 194 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 C2CD4BA6NLJ0 364 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 FERP16591 822 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 TACR2P21452 398 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 CCR1P32246 355 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 GBP1P32455 592 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 RPS24P62847 133 aaKnown RBP10.06□□□□□ -0.8
RNF4-221ENST00000513643 PTPRNQ16849 979 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 PPP1R15BQ5SWA1 713 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 HEATR6Q6AI08 1181 aaKnown RBP10.06□□□□□ -0.8
RNF4-221ENST00000513643 KIAA1211LQ6NV74 962 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 MMS22LQ6ZRQ5 1243 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 MON1BQ7L1V2 547 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 ANKS1BQ7Z6G8 1248 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 METTL3Q86U44 580 aaKnown RBP10.06□□□□□ -0.8
RNF4-221ENST00000513643 HJURPQ8NCD3 748 aaPredicted RBP10.06□□□□□ -0.8
RNF4-221ENST00000513643 TSTD1Q8NFU3 115 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 SLC30A5Q8TAD4 765 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 WFIKKN2Q8TEU8 576 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 RUBCNQ92622 972 aa10.06□□□□□ -0.8
RNF4-221ENST00000513643 MYO19Q96H55 970 aa10.06□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 91 ms