RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 ST8SIA6P61647 398 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 GALNT3Q14435 633 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SGO1Q5FBB7 561 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 MAGEB10Q96LZ2 347 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC38A2Q96QD8 506 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 EIF2AK1Q9BQI3 630 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 POLR3FQ9H1D9 316 aaPredicted RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 XKR8Q9H6D3 395 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 LY9Q9HBG7 655 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 TMEM165Q9HC07 324 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 PLCL2Q9UPR0 1127 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 PTPRTO14522 1441 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 H3BN98 237 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 STX16-NPEPL1H3BU86 382 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 STX16O14662 325 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 MYBL2P10244 700 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 NOS3P29474 1203 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SDC2P34741 201 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ADAM17P78536 824 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ZNF844Q08AG5 666 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 PPM1LQ5SGD2 360 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 ANKS6Q68DC2 871 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 RNF19BQ6ZMZ0 732 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 GALNT15Q8N3T1 639 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 RP9Q8TA86 221 aaKnown RBP11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 FIG4Q92562 907 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 NT5C1AQ9BXI3 368 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 C17orf75Q9HAS0 396 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 SNX7Q9UNH6 387 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 DYRK1BQ9Y463 629 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 GMPPBQ9Y5P6 360 aa11.48□□□□□ -0.57
LIMCH1-208ENST00000508501 KIF21AQ7Z4S6 1674 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PDLIM1O00151 329 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ALDH1A2O94788 518 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 OR6B1O95007 311 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 LBPP18428 481 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ADORA2BP29275 332 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ADORA1P30542 326 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NCOA4Q13772 614 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NR6A1Q15406 480 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 OLFML2AQ68BL7 652 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 EIF5AL1Q6IS14 154 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ZNF438Q7Z4V0 828 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SRBD1Q8N5C6 995 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 IPMKQ8NFU5 416 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 REPS1Q96D71 796 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MARCH7Q9H992 704 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PNPLA8Q9NP80 782 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PCDHA10Q9Y5I2 948 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 A0A1W2PQ72 361 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 M0QX08 132 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ORC5O43913 435 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 FCER1AP12319 257 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 GRK3P35626 688 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ALDH3A2P51648 485 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PSME3P61289 254 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 EIF2S3LQ2VIR3 472 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC9A4Q6AI14 798 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 FRMD7Q6ZUT3 714 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SNX32Q86XE0 403 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 OR56A4Q8NGH8 313 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 C18orf25Q96B23 403 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 CCDC115Q96NT0 180 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 LXNQ9BS40 222 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MTG1Q9BT17 334 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SPATA5L1Q9BVQ7 753 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NIF3L1Q9GZT8 377 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NOL11Q9H8H0 719 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 GDF3Q9NR23 364 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PNMA3Q9UL41 463 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MOCS2O96007 188 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 CASP1P29466 404 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 RPL22P35268 128 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 IL6STP40189 918 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SPIDRQ14159 915 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ACCSLQ4AC99 568 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MSANTD1Q6ZTZ1 278 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 SLC44A2Q8IWA5 706 aaPredicted RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ANKRD13AQ8IZ07 590 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 OR8H1Q8NGG4 311 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 HDAC7Q8WUI4 952 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 TBC1D10AQ9BXI6 508 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MED28Q9H204 178 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 TRNAU1APQ9NX07 287 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ZC3H4Q9UPT8 1303 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NPHP3-ACAD11A0A0J9YXS1 232 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 CRTAMO95727 393 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 DBTP11182 482 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 NPR2P20594 1047 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PCSK1P29120 753 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ETFBP38117 255 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 PTGES3Q15185 160 aaKnown RBP11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 ERMARDQ5T6L9 678 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 XKRXQ6PP77 449 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 CPNE1Q99829 537 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 APOL5Q9BWW9 433 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 KCTD10Q9H3F6 313 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 MORF4L1Q9UBU8 362 aa11.47□□□□□ -0.57
LIMCH1-208ENST00000508501 TRIM10Q9UDY6 481 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms