RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 GOLIM4O00461 696 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ORC4O43929 436 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 FGF18O76093 207 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 MBD4O95243 580 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 NDUFB10O96000 172 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SPATA31D3P0C874 917 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 TSPY3P0CV98 308 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 TSPY8P0CW00 308 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 LAG3P18627 525 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ECHS1P30084 290 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ADSLP30566 484 aaPredicted RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 CRHR1P34998 444 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 CA8P35219 290 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SLC1A4P43007 532 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 CCR10P46092 362 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 MASP1P48740 699 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 PER3P56645 1201 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 MRPS9P82933 396 aaKnown RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 MXRA7P84157 204 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SCAPQ12770 1279 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 GPATCH4Q5T3I0 446 aaKnown RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 LRRC55Q6ZSA7 311 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SPATA31D4Q6ZUB0 917 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 CHST3Q7LGC8 479 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 GDF7Q7Z4P5 450 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SLC41A1Q8IVJ1 513 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 LCORLQ8N3X6 602 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ATL2Q8NHH9 583 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ZFP28Q8NHY6 868 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SDR42E1Q8WUS8 393 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 AFG1LQ8WV93 481 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 LENG9Q96B70 501 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ZNF689Q96CS4 500 aaPredicted RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 AHCYL2Q96HN2 611 aaKnown RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 IWS1Q96ST2 819 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SLC46A2Q9BY10 475 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ACE2Q9BYF1 805 aaPredicted RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 A1CFQ9NQ94 594 aaKnown RBP4.47□□□□□ -1.69
USP54-217ENST00000498213 ENTPD7Q9NQZ7 604 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 IGSF9Q9P2J2 1179 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 ANAPC4Q9UJX5 808 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 SDK1Q7Z5N4 2213 aa4.47□□□□□ -1.69
USP54-217ENST00000498213 NLRC5Q86WI3 1866 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 KANSL1LA0AUZ9 987 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 ENO4A6NNW6 628 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 C4orf47A7E2U8 309 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RNASET2O00584 256 aaKnown RBP4.46□□□□□ -1.7
USP54-217ENST00000498213 N4BP1O75113 896 aaKnown RBP4.46□□□□□ -1.7
USP54-217ENST00000498213 BCAR3O75815 825 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 STAM2O75886 525 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 TGFB3P10600 412 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RBP3P10745 1247 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 EDNRBP24530 442 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RIPPLY3P57055 190 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 STARD6P59095 220 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RNASE9P60153 205 aaKnown RBP4.46□□□□□ -1.7
USP54-217ENST00000498213 GHRHRQ02643 423 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 MTAPQ13126 283 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 PPP2R5BQ15173 497 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 ALX1Q15699 326 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 CCDC96Q2M329 555 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 COLEC12Q5KU26 742 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 PRAMEF14Q5SWL7 426 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 TCEAL6Q6IPX3 200 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 CCDC149Q6ZUS6 474 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 ZNF627Q7L945 461 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 MRGPREQ86SM8 312 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 LDLRAD3Q86YD5 345 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 PLXDC1Q8IUK5 500 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 THNSL1Q8IYQ7 743 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 AFAP1L2Q8N4X5 818 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RNF169Q8NCN4 708 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RSPH1Q8WYR4 309 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 TNPO1Q92973 898 aaKnown RBP4.46□□□□□ -1.7
USP54-217ENST00000498213 TCEAL3Q969E4 200 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 FATE1Q969F0 183 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 ADI1Q9BV57 179 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RNF41Q9H4P4 317 aaPredicted RBP4.46□□□□□ -1.7
USP54-217ENST00000498213 ARMT1Q9H993 441 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 IFT122Q9HBG6 1241 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 RNF146Q9NTX7 359 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 C14orf119Q9NWQ9 140 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 CYP39A1Q9NYL5 469 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 CLIP2Q9UDT6 1046 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 APC2O95996 2303 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 MYH1P12882 1939 aa4.46□□□□□ -1.7
USP54-217ENST00000498213 TBKBP1A7MCY6 615 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 DIRC3C9JPN6 131 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 RNF113AO15541 343 aaKnown RBP4.45□□□□□ -1.7
USP54-217ENST00000498213 GPAA1O43292 621 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 PPFIA2O75334 1257 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 ZNF806P0C7X5 589 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 ZNF286BP0CG31 522 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 TXNP10599 105 aaKnown RBP4.45□□□□□ -1.7
USP54-217ENST00000498213 EPCAMP16422 314 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 CASTP20810 708 aaKnown RBP4.45□□□□□ -1.7
USP54-217ENST00000498213 TDO2P48775 406 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 SLC5A3P53794 718 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 NHLH2Q02577 135 aa4.45□□□□□ -1.7
USP54-217ENST00000498213 UBE3AQ05086 875 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms