RNA–Protein interactions for RNA: ENST00000495630.1

TMEM53-209, Transcript of transmembrane protein 53, human

TSL 2

Gene TMEM53, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TMEM53-209	ENST00000495630	TMEM8A	Q9HCN3	771 aa		18.33	■□□□□ 0.52
TMEM53-209	ENST00000495630	PRSS16	Q9NQE7	514 aa		18.33	■□□□□ 0.52
TMEM53-209	ENST00000495630	SUN2	Q9UH99	717 aa		18.33	■□□□□ 0.52
TMEM53-209	ENST00000495630	RCOR1	Q9UKL0	485 aa		18.33	■□□□□ 0.52
TMEM53-209	ENST00000495630	CFAP45	Q9UL16	551 aa		18.33	■□□□□ 0.52
TMEM53-209	ENST00000495630	PTPRB	P23467	1997 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	LOC400499	M0QZD8	3231 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	EIF4E1B	A6NMX2	242 aa	Known RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	PAPSS1	O43252	624 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	LATS1	O95835	1130 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	DNTT	P04053	509 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	ATP5B	P06576	529 aa	Known RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	TRIM49	P0CI25	452 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	TRIM49C	P0CI26	452 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	NR2F2	P24468	414 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	RPL13	P26373	211 aa	Known RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	PSMC2	P35998	433 aa	Known RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	CCT8	P50990	548 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	TKTL1	P51854	596 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	RAD23B	P54727	409 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	RPS14	P62263	151 aa	Known RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FOXD4L6	Q3SYB3	417 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FOXD4L5	Q5VV16	416 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	KRT39	Q6A163	491 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FOXD4L3	Q6VB84	417 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	CHST9	Q7L1S5	443 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	MARCH9	Q86YJ5	346 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FMNL3	Q8IVF7	1028 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FAM186B	Q8IYM0	893 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	CYB5D2	Q8WUJ1	264 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	GOLGA1	Q92805	767 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	BBC3	Q96PG8	261 aa	Predicted RBP	18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	CISH	Q9NSE2	258 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	IGSF10	Q6WRI0	2623 aa		18.32	■□□□□ 0.52
TMEM53-209	ENST00000495630	GOLGA4	Q13439	2230 aa	Known RBP	18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630		H0Y8X5	98 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	FSBP	O95073	299 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	DLD	P09622	509 aa	Known RBP	18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	ZSCAN22	P10073	491 aa	Predicted RBP	18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	CTSK	P43235	329 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	BCAT1	P54687	386 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	INAVA	Q3KP66	663 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	MPP7	Q5T2T1	576 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	TMPRSS12	Q86WS5	348 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	AHI1	Q8N157	1196 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	RNF139	Q8WU17	664 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	IRX2	Q9BZI1	471 aa	Predicted RBP	18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	ULBP1	Q9BZM6	244 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	ABCB8	Q9NUT2	735 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	GGA2	Q9UJY4	613 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	NCKAP1	Q9Y2A7	1128 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	KNTC1	P50748	2209 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	CELSR3	Q9NYQ7	3312 aa		18.31	■□□□□ 0.52
TMEM53-209	ENST00000495630	FAM149A	A5PLN7	773 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	PABPC1	P11940	636 aa	Known RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	RACK1	P63244	317 aa	Known RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	ADAM9	Q13443	819 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	TTC31	Q49AM3	519 aa	Predicted RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	BSPRY	Q5W0U4	402 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	MBLAC2	Q68D91	279 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	BHLHA9	Q7RTU4	235 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	ADAT2	Q7Z6V5	191 aa	Known RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	ZNF366	Q8N895	744 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	NDRG1	Q92597	394 aa	Known RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	SEMA4D	Q92854	862 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	CCDC47	Q96A33	483 aa	Known RBP	18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	MMRN2	Q9H8L6	949 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	RAB20	Q9NX57	234 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	SCML1	Q9UN30	329 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	CKAP5	Q14008	2032 aa		18.3	■□□□□ 0.52
TMEM53-209	ENST00000495630	XPO1	O14980	1071 aa	Known RBP	18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	VILL	O15195	856 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	RHOBTB3	O94955	611 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	F13A1	P00488	732 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	CDK4	P11802	303 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	POLR2E	P19388	210 aa	Known RBP	18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	CMA1	P23946	247 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	SFSWAP	Q12872	951 aa	Known RBP	18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	KCNT1	Q5JUK3	1230 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	ZNF776	Q68DI1	518 aa	Predicted RBP	18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	KIAA0895L	Q68EN5	471 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	DHRS13	Q6UX07	377 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	USP30	Q70CQ3	517 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	ZNF557	Q8N988	423 aa	Predicted RBP	18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	FBXL13	Q8NEE6	735 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	SKA1	Q96BD8	255 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	ORAI3	Q9BRQ5	295 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	LRRC4	Q9HBW1	653 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	FTSJ1	Q9UET6	329 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	SFMBT1	Q9UHJ3	866 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	PCDHGA1	Q9Y5H4	931 aa		18.29	■□□□□ 0.52
TMEM53-209	ENST00000495630	NUMA1	Q14980	2115 aa		18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630		A0A1B0GTQ1	180 aa		18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630	C21orf59	P57076	290 aa		18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630	CCDC157	Q569K6	752 aa		18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630	SCML4	Q8N228	414 aa		18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630	IPO9	Q96P70	1041 aa	Known RBP	18.28	■□□□□ 0.52
TMEM53-209	ENST00000495630	ACE2	Q9BYF1	805 aa	Predicted RBP	18.28	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms