RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 ZBTB46Q86UZ6 589 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 SCUBE1Q8IWY4 988 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ADGRF2Q8IZF7 708 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 SPATA22Q8NHS9 363 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 PIF1Q9H611 641 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 CHRAC1Q9NRG0 131 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 PCDH10Q9P2E7 1040 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 LGALS13Q9UHV8 139 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 TNFSF13BQ9Y275 285 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 MTO1Q9Y2Z2 717 aaKnown RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 MAST2Q6P0Q8 1798 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 KPNA7A9QM74 516 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 TYROBPO43914 113 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 PEX11AO75192 247 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 TBX10O75333 385 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 HIC1Q14526 733 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 ADGRD1Q6QNK2 874 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 SPATA24Q86W54 205 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 MIB1Q86YT6 1006 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 FBXO41Q8TF61 875 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 SLC7A6OSQ96CW6 309 aaPredicted RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 P2RY11Q96G91 374 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 CATSPER2Q96P56 530 aa13.84□□□□□ -0.19
GPC1-209ENST00000495100 KCTD15Q96SI1 283 aaPredicted RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 PRG3Q9Y2Y8 225 aaPredicted RBP13.84□□□□□ -0.19
GPC1-209ENST00000495100 MKI67P46013 3256 aaKnown RBP13.83□□□□□ -0.19
GPC1-209ENST00000495100 DPPA5A6NC42 116 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 BEST1O76090 585 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 SLC1A6P48664 564 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 CCNHP51946 323 aaPredicted RBP13.83□□□□□ -0.2
GPC1-209ENST00000495100 MAXP61244 160 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 NAT14Q8WUY8 206 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 SLC44A1Q8WWI5 657 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 CSPG4P5Q96PW8 444 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 ANLNQ9NQW6 1124 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 TREHO43280 583 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 ATP5HO75947 161 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 TGFB3P10600 412 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 CCNA1P78396 465 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 IRF9Q00978 393 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 ZNF280DQ6N043 979 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 RIPOR1Q6ZS17 1223 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 TSHZ1Q6ZSZ6 1077 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 OTOP3Q7RTS5 596 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 CCNJLQ8IV13 435 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 SPDYE1Q8NFV5 336 aaPredicted RBP13.83□□□□□ -0.2
GPC1-209ENST00000495100 GSDMBQ8TAX9 411 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 NDNQ99608 321 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 XPNPEP3Q9NQH7 507 aa13.83□□□□□ -0.2
GPC1-209ENST00000495100 ADGRA2Q96PE1 1338 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 FGFR3P22607 806 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 NEK3P51956 506 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 NAGLUP54802 743 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 CYTH1Q15438 398 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 TMEM198Q66K66 360 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 PQLC3Q8N755 202 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 FSD1LQ9BXM9 530 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 C20orf27Q9GZN8 174 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 VCXQ9H320 206 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 TMEM216Q9P0N5 145 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 SLC15A5A6NIM6 579 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 SDR42E2A6NKP2 422 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 C9IYK1 514 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 MSI1O43347 362 aaKnown RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 VAPBO95292 243 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 MT-CYBP00156 380 aaPredicted RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 OR4Q2P0C623 313 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 TPBGLP0DKB5 382 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 RALBP11234 206 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 BDNFP23560 247 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 OAZ1P54368 228 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 GJA9P57773 515 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 NOMO2Q5JPE7 1267 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 IYDQ6PHW0 289 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 MYLK4Q86YV6 388 aaPredicted RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 HPS6Q86YV9 775 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 PLEKHA5Q9HAU0 1116 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 DDX43Q9NXZ2 648 aaKnown RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 B4GALT4O60513 344 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 TSPAN1O60635 241 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 C22orf31O95567 290 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 ZNF280AP59817 542 aaPredicted RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 TARBP2Q15633 366 aaKnown RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 SLC45A4Q5BKX6 768 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 SH2D4BQ5SQS7 431 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 LRRC38Q5VT99 294 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 RNF139Q8WU17 664 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 SARS2Q9NP81 518 aaKnown RBP13.82□□□□□ -0.2
GPC1-209ENST00000495100 DTLQ9NZJ0 730 aa13.82□□□□□ -0.2
GPC1-209ENST00000495100 GPC4O75487 556 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 SEC24DO94855 1032 aaPredicted RBP13.81□□□□□ -0.2
GPC1-209ENST00000495100 HNRNPLP14866 589 aaKnown RBP eCLIP13.81□□□□□ -0.2
GPC1-209ENST00000495100 ABCD1P33897 745 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 ART3Q13508 389 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 MTHFD1LQ6UB35 978 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 LRRC74BQ6ZQY2 392 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 C4orf50Q6ZRC1 276 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 CAND1Q86VP6 1230 aaKnown RBP13.81□□□□□ -0.2
GPC1-209ENST00000495100 SLCO2A1Q92959 643 aa13.81□□□□□ -0.2
GPC1-209ENST00000495100 ALKBH8Q96BT7 664 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms