RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 NSMCE1Q8WV22 266 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 MTBPQ96DY7 904 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 NSL1Q96IY1 281 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 PRDM12Q9H4Q4 367 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 EBF2Q9HAK2 575 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 MOCS1Q9NZB8 636 aa11.55□□□□□ -0.56
CHMP3-209ENST00000494623 C17orf102A2RUQ5 167 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 EEF2KO00418 725 aaKnown RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 PTGESO14684 152 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 DAB1O75553 588 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 ZNF865P0CJ78 1059 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 PSMB4P28070 264 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 ATG16L1Q676U5 607 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CES3Q6UWW8 571 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CLEC20AQ6ZU45 233 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 PID1Q7Z2X4 250 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 LIMS2Q7Z4I7 341 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 TOP6BLQ8N6T0 577 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 SLC7A14Q8TBB6 771 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 KCNV2Q8TDN2 545 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 NPY6RQ99463 290 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 PIGVQ9NUD9 493 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 DDX43Q9NXZ2 648 aaKnown RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 IL1RAPL1Q9NZN1 696 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 NKX1-2Q9UD57 310 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 MARCOQ9UEW3 520 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 STAP1Q9ULZ2 295 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 NRP1O14786 923 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 KLF11O14901 512 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CYP2B6P20813 491 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CCNFP41002 786 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 SERPINB9P50453 376 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 IFRD2Q12894 506 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 MAP2K5Q13163 448 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 SPDYAQ5MJ70 313 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CES4AQ5XG92 561 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 C16orf46Q6P387 395 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 LRRC8BQ6P9F7 803 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 CTU1Q7Z7A3 348 aaKnown RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 TTC7BQ86TV6 843 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 ARID3BQ8IVW6 561 aaPredicted RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 RNF169Q8NCN4 708 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 WNT8BQ93098 351 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 PGBD4Q96DM1 585 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 KCNK16Q96T55 309 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 AP5M1Q9H0R1 490 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 ARMCX1Q9P291 453 aa11.54□□□□□ -0.56
CHMP3-209ENST00000494623 MYO18AQ92614 2054 aaKnown RBP11.54□□□□□ -0.56
CHMP3-209ENST00000494623 FAM72CH0Y354 149 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 KCNK1O00180 336 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TRAFD1O14545 582 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 CRHR1P34998 444 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 AFF1P51825 1210 aaKnown RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 OLIG2Q13516 323 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 PDK1Q15118 436 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 FAM72AQ5TYM5 149 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 FAM72DQ6L9T8 149 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 ZCCHC23Q6ZST2 131 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 ALYREFQ86V81 257 aaKnown RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 FAM72BQ86X60 149 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TRIM42Q8IWZ5 723 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 ZNF567Q8N184 647 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 STKLD1Q8NE28 680 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 SKA1Q96BD8 255 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 AGAP3Q96P47 875 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 PGLYRP2Q96PD5 576 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 FERMT1Q9BQL6 677 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 ULBP1Q9BZM6 244 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 RCOR3Q9P2K3 495 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 LNPEPQ9UIQ6 1025 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 C15orf41Q9Y2V0 281 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TRIP12Q14669 1992 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 UNCXA6NJT0 531 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 HAS3O00219 553 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 CCDC22O60826 627 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 OPHN1O60890 802 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 FAM200BP0CF97 657 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 CPT1AP50416 773 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 WASHC5Q12768 1159 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 RFX8Q6ZV50 586 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 HACE1Q8IYU2 909 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TTC8Q8TAM2 541 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 ARNTL2Q8WYA1 636 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 N4BP2L2Q92802 583 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 APBB2Q92870 758 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 UPF1Q92900 1129 aaKnown RBP eCLIP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 NT5C3BQ969T7 300 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 SENP8Q96LD8 212 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 MIPEPQ99797 713 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TUBB6Q9BUF5 446 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 CADM1Q9BY67 442 aaKnown RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 C20orf27Q9GZN8 174 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 TSPYL2Q9H2G4 693 aaPredicted RBP11.53□□□□□ -0.56
CHMP3-209ENST00000494623 KRT82Q9NSB4 513 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 CENPFP49454 3210 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 DNAH12Q6ZR08 3092 aa11.53□□□□□ -0.56
CHMP3-209ENST00000494623 MYBPHLA2RUH7 354 aa11.52□□□□□ -0.56
CHMP3-209ENST00000494623 YJEFN3A6XGL0 299 aa11.52□□□□□ -0.56
CHMP3-209ENST00000494623 E7ENQ6 273 aa11.52□□□□□ -0.56
CHMP3-209ENST00000494623 H0Y3Z8 333 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms