RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SCML1Q9UN30 329 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 IGF2RP11717 2491 aa12.08□□□□□ -0.48
COL6A3-213ENST00000493475 METTL12A8MUP2 240 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 WASH3PC4AMC7 463 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 FLRT2O43155 660 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 FBXO21O94952 628 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 MOCS3O95396 460 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 IGLV3-19P01714 112 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 PAEPP09466 180 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 POLR2EP19388 210 aaKnown RBP12.07□□□□□ -0.48
COL6A3-213ENST00000493475 COBLL1Q53SF7 1204 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 MPP7Q5T2T1 576 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 BSPRYQ5W0U4 402 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 ADAT2Q7Z6V5 191 aaKnown RBP12.07□□□□□ -0.48
COL6A3-213ENST00000493475 FAM217AQ8IXS0 508 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 SCML4Q8N228 414 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 KCTD13Q8WZ19 329 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 GATA6Q92908 595 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 NT5C1BQ96P26 610 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 MKRN2Q9H000 416 aaKnown RBP12.07□□□□□ -0.48
COL6A3-213ENST00000493475 BTBD1Q9H0C5 482 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 SLC6A17Q9H1V8 727 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 GAREM1Q9H706 876 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 FSCN3Q9NQT6 498 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 HCN2Q9UL51 889 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 WASF3Q9UPY6 502 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 COQ4Q9Y3A0 265 aa12.07□□□□□ -0.48
COL6A3-213ENST00000493475 MYOFQ9NZM1 2061 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 SH3BP5O60239 455 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 DFNA5O60443 496 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 DLDP09622 509 aaKnown RBP12.06□□□□□ -0.48
COL6A3-213ENST00000493475 FTH1P19P0C7X4 201 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 PABPC1P11940 636 aaKnown RBP12.06□□□□□ -0.48
COL6A3-213ENST00000493475 CD59P13987 128 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 MCCD1P59942 119 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-213ENST00000493475 NUCB2P80303 420 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 CCDC40Q4G0X9 1142 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 CHST9Q7L1S5 443 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 GANCQ8TET4 914 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 SEMA4DQ92854 862 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 SERPINB11Q96P15 392 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 SGK2Q9HBY8 427 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 TM7SF3Q9NS93 570 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 ABCB8Q9NUT2 735 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 GGA2Q9UJY4 613 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 TPX2Q9ULW0 747 aaKnown RBP12.06□□□□□ -0.48
COL6A3-213ENST00000493475 PCDHGB2Q9Y5G2 931 aa12.06□□□□□ -0.48
COL6A3-213ENST00000493475 GON4LQ3T8J9 2241 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 BICDL2A1A5D9 508 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 FAM221BA6H8Z2 402 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 TSPAN3O60637 253 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 ASLP04424 464 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 LCP1P13796 627 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 PRKCHP24723 683 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 MAOBP27338 520 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 HOXD9P28356 352 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 NNMTP40261 264 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 PRCPP42785 496 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 C21orf59P57076 290 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 RING1Q06587 406 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CAMK2GQ13555 558 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CDH18Q13634 790 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 BECN1Q14457 450 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 RNF219Q5W0B1 726 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 ZNF776Q68DI1 518 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 TMEM270Q6UE05 265 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 LCLAT1Q6UWP7 414 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 RAB44Q7Z6P3 723 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 FAM124AQ86V42 546 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CACUL1Q86Y37 369 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 MFN1Q8IWA4 741 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 SMYD4Q8IYR2 804 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 PPM1KQ8N3J5 372 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 GALNT15Q8N3T1 639 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CHCHD4Q8N4Q1 142 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 HJURPQ8NCD3 748 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 ADAMTS14Q8WXS8 1223 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 EDEM1Q92611 657 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 TATDN2Q93075 761 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 EEF2KMTQ96G04 330 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 HSFY1Q96LI6 401 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CEP63Q96MT8 703 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 PPP1R9BQ96SB3 815 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 OSGEPQ9NPF4 335 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 EIF2B4Q9UI10 523 aaKnown RBP12.05□□□□□ -0.48
COL6A3-213ENST00000493475 STOML2Q9UJZ1 356 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 KLK13Q9UKR3 277 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 CEP83Q9Y592 693 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 PCDHB4Q9Y5E5 795 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 ZFHX4Q86UP3 3567 aa12.05□□□□□ -0.48
COL6A3-213ENST00000493475 MYO18AQ92614 2054 aaKnown RBP12.04□□□□□ -0.48
COL6A3-213ENST00000493475 CFAP47Q6ZTR5 3102 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 SRRM3A6NNA2 597 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-213ENST00000493475 M0QYV0 167 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 O00370 1275 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 CAPN9O14815 690 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 P4HA2O15460 535 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 MED7O43513 233 aa12.04□□□□□ -0.48
COL6A3-213ENST00000493475 FGFR1OPO95684 399 aaKnown RBP12.04□□□□□ -0.48
COL6A3-213ENST00000493475 SEMA4FO95754 770 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms