RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 NEXNQ0ZGT2 675 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 CBFBQ13951 182 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 KCNJ12Q14500 433 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF766Q5HY98 468 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 METTL24Q5JXM2 366 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 TAX1BP1Q86VP1 789 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 CAND1Q86VP6 1230 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 MAPKAPK5Q8IW41 473 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 WDTC1Q8N5D0 677 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF366Q8N895 744 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 Q8NA96 180 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 JAKMIP2Q96AA8 810 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 VPS50Q96JG6 964 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 MAK16Q9BXY0 300 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 SMARCAD1Q9H4L7 1026 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 ERVK-5Q9HDB9 667 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 FAM53CQ9NYF3 392 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 LIMA1Q9UHB6 759 aaKnown RBP5.06□□□□□ -1.6
VPS13A-212ENST00000493341 KCNE2Q9Y6J6 123 aa5.06□□□□□ -1.6
VPS13A-212ENST00000493341 CCDC187A0A096LP49 1063 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 MYADML2A6NDP7 307 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 GAGE10A6NGK3 116 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 PSMD9O00233 223 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 ZNF213O14771 459 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 ZFPL1O95159 310 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 URODP06132 367 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 TM4SF1P30408 202 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 CTCFP49711 727 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 AFF3P51826 1226 aaKnown RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 DGKQP52824 942 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 CDK18Q07002 472 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 EPS8Q12929 822 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 EIF2B5Q13144 721 aaKnown RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 BMP2KLQ5H9B9 411 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 HECTD3Q5T447 861 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 NAA16Q6N069 864 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 MON1AQ86VX9 555 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 GSPT2Q8IYD1 628 aaKnown RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 SAAL1Q96ER3 474 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 PERPQ96FX8 193 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 ACTRT3Q9BYD9 372 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 GLOD4Q9HC38 313 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 KCNK9Q9NPC2 374 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 CCDC177Q9NQR7 707 aaPredicted RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 THAP1Q9NVV9 213 aa5.05□□□□□ -1.6
VPS13A-212ENST00000493341 CNOT6Q9ULM6 557 aaKnown RBP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS13A-212ENST00000493341 A0A1W2PQ09 198 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 LYL1P12980 280 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 BSGP35613 385 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 RPS19P39019 145 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 FOXL2P58012 376 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 KIAA2012Q0VF49 1180 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 ST3GAL2Q16842 350 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 CYP20A1Q6UW02 462 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 KDELC2Q7Z4H8 507 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 PRPF39Q86UA1 669 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 TNIP2Q8NFZ5 429 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 NCSTNQ92542 709 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 GLG1Q92896 1179 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 HCN3Q9P1Z3 774 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 CHORDC1Q9UHD1 332 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 VPS4AQ9UN37 437 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 CARMIL2Q6F5E8 1435 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 A0A1W2PS29 197 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 A8MV72 311 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 MYO1GB0I1T2 1018 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 TEX22C9J3V5 150 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 IGHA1P01876 353 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 GATA3P23771 443 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 ABCD1P33897 745 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 MSX2P35548 267 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 TAS2R50P59544 299 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 TMEM115Q12893 351 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 VMACQ2NL98 169 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 SLC9B1Q4ZJI4 515 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 SH2D4BQ5SQS7 431 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 ARHGEF18Q6ZSZ5 1173 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 D2HGDHQ8N465 521 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 FAM109AQ8N4B1 249 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 MAFAQ8NHW3 353 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 NOC3LQ8WTT2 800 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 TRMT61AQ96FX7 289 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 PRR11Q96HE9 360 aaPredicted RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 SPATA17Q96L03 361 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 OSBPL9Q96SU4 736 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 EIF2B4Q9UI10 523 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 CD207Q9UJ71 328 aa5.04□□□□□ -1.6
VPS13A-212ENST00000493341 OAS3Q9Y6K5 1087 aaKnown RBP5.04□□□□□ -1.6
VPS13A-212ENST00000493341 A1L4Q6 167 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 GPR42O15529 346 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 HYAL3O43820 417 aaPredicted RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 ELANEP08246 267 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 CYP3A4P08684 503 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 NR2F1P10589 423 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 PSMB10P40306 273 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 PBX3P40426 434 aa5.03□□□□□ -1.6
VPS13A-212ENST00000493341 RPL7AP62424 266 aaKnown RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 PDCD4Q53EL6 469 aaKnown RBP5.03□□□□□ -1.6
VPS13A-212ENST00000493341 C1orf141Q5JVX7 400 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms