RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SIX6OS1Q8N1H7 587 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 SCML4Q8N228 414 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ZNF366Q8N895 744 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 PNPLA1Q8N8W4 532 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 C1orf216Q8TAB5 229 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 WFDC5Q8TCV5 224 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 WFIKKN2Q8TEU8 576 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 KCTD13Q8WZ19 329 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 GAREM1Q9H706 876 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ABCC13Q9NSE7 274 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ABCB8Q9NUT2 735 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 GGA2Q9UJY4 613 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 FNDC3AQ9Y2H6 1198 aaKnown RBP12.93□□□□□ -0.34
CPSF3-204ENST00000489403 ATP6V1DQ9Y5K8 247 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 SLCO1B1Q9Y6L6 691 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 PLXNB3Q9ULL4 1909 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 TMEM131Q92545 1883 aa12.93□□□□□ -0.34
CPSF3-204ENST00000489403 NUMA1Q14980 2115 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TRIM49BA6NDI0 452 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TAF4O00268 1085 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 GABBR2O75899 941 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 CER1O95813 267 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 ZNF883P0CG24 379 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 C7P10643 843 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 IGF2RP11717 2491 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 PABPC1P11940 636 aaKnown RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 LCP1P13796 627 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TBXAS1P24557 533 aaPredicted RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 ACSL1P33121 698 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 MATKP42679 507 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 YWHAEP62258 255 aaKnown RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 LRMPQ12912 555 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 PTPRNQ16849 979 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 ADGRF1Q5T601 910 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 GLRX5Q86SX6 157 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 FMR1NBQ8N0W7 255 aaPredicted RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 AHI1Q8N157 1196 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 SNX19Q92543 992 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 SLC35C1Q96A29 364 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TMA16Q96EY4 203 aaKnown RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 CCDC34Q96HJ3 373 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TSG101Q99816 390 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 PCED1AQ9H1Q7 454 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 LHX5Q9H2C1 402 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 C6orf106Q9H6K1 298 aaPredicted RBP12.92□□□□□ -0.34
CPSF3-204ENST00000489403 CNGB3Q9NQW8 809 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 TM7SF3Q9NS93 570 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 RMND1Q9NWS8 449 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 PTPRBP23467 1997 aa12.92□□□□□ -0.34
CPSF3-204ENST00000489403 A0A1B0GVT2 93 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 PIK3R2O00459 728 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 IGLV3-27P01718 113 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 HOXB3P14651 431 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 RGS7P49802 495 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 RING1Q06587 406 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 HLA-BQ31612 363 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 MBLAC2Q68D91 279 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 PMF1Q6P1K2 205 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 MSANTD2Q6P1R3 559 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 RFWD3Q6PCD5 774 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 IL27RAQ6UWB1 636 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 LCLAT1Q6UWP7 414 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 SLCO6A1Q86UG4 719 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 PROSER1Q86XN7 944 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 BAHD1Q8TBE0 780 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 SETD7Q8WTS6 366 aaKnown RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 SLC35F5Q8WV83 523 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 TFAP2BQ92481 460 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 ERCC4Q92889 916 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 GSDMAQ96QA5 445 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 PLA2G4CQ9UP65 541 aa12.91□□□□□ -0.34
CPSF3-204ENST00000489403 APOBEC2Q9Y235 224 aaKnown RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-204ENST00000489403 GOLGA6L7A0A1B0GV03 622 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 TBL1XO60907 577 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 PAEPP09466 180 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 DLDP09622 509 aaKnown RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 SLC6A4P31645 630 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 CD70P32970 193 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 FMO5P49326 533 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 CSNK1EP49674 416 aaKnown RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 RPS14P62263 151 aaKnown RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 LRRC63Q05C16 580 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 SCAPQ12770 1279 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 FAM133BQ5BKY9 247 aaKnown RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 MPP7Q5T2T1 576 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 PIK3R6Q5UE93 754 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 TMEM270Q6UE05 265 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 DBX2Q6ZNG2 339 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 SPATA20Q8TB22 786 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 CLEC4CQ8WTT0 213 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 IRGQQ8WZA9 623 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 KAT5Q92993 513 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 PRICKLE1Q96MT3 831 aaPredicted RBP12.9□□□□□ -0.34
CPSF3-204ENST00000489403 ZSWIM1Q9BR11 485 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 BTBD1Q9H0C5 482 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 FBRSQ9HAH7 460 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 PRSS16Q9NQE7 514 aa12.9□□□□□ -0.34
CPSF3-204ENST00000489403 TOR4AQ9NXH8 423 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms