RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SLMAPQ14BN4 828 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 USP41Q3LFD5 358 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 PPP6R3Q5H9R7 873 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-230ENST00000488543 C1orf228Q6PIY5 440 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 GPATCH11Q8N954 259 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 ANKRD42Q8N9B4 389 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 GDAP1Q8TB36 358 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 IRGQQ8WZA9 623 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 CCT6BQ92526 530 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 TMEM169Q96HH4 297 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 INTS9Q9NV88 658 aaKnown RBP12.58□□□□□ -0.4
HDAC6-230ENST00000488543 PLXNA3P51805 1871 aa12.58□□□□□ -0.4
HDAC6-230ENST00000488543 RASGRF2O14827 1237 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 MCF2LO15068 1137 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 RASSF9O75901 435 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 RBP3P10745 1247 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 MYOGP15173 224 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 PGFP49763 221 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 ELAVL2Q12926 359 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 C9orf50Q5SZB4 431 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 FAM109BQ6ICB4 259 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 KIAA1841Q6NSI8 718 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 PSTKQ8IV42 348 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 RNF168Q8IYW5 571 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 DCP1BQ8IZD4 617 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 CSPG4P5Q96PW8 444 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 WDR6Q9NNW5 1121 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 ABCF3Q9NUQ8 709 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 TBK1Q9UHD2 729 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 SLC4A7Q9Y6M7 1214 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 GRXCR1A8MXD5 290 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 TNFRSF10BO14763 440 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 OR1D2P34982 312 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 RPL22P35268 128 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 HTRA4P83105 476 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 DEUP1Q05D60 604 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 ZKSCAN8Q15776 578 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 RNASEH2BQ5TBB1 312 aaKnown RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 C4orf50Q6ZRC1 276 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 EXOC3L1Q86VI1 746 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 HERC6Q8IVU3 1022 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 FBXO22Q8NEZ5 403 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 SLC7A14Q8TBB6 771 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 ADAM32Q8TC27 787 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 P3H4Q92791 437 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 PGAP3Q96FM1 320 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-230ENST00000488543 HTATIP2Q9BUP3 242 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 ANLNQ9NQW6 1124 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 SPG21Q9NZD8 308 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 MYO7AQ13402 2215 aa12.57□□□□□ -0.4
HDAC6-230ENST00000488543 SYNJ2BP-COX16A0A087WUM0 186 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 I6L893 689 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 IFNB1P01574 187 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ATP2A2P16615 1042 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 NRLP54845 237 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ROR1Q01973 937 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 DUSP4Q13115 394 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 NME3Q13232 169 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 E2F5Q15329 346 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 PSMD5Q16401 504 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 KYNUQ16719 465 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 HP1BP3Q5SSJ5 553 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 FAM182AQ5T1J6 154 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CYB5D1Q6P9G0 228 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 PSRC1Q6PGN9 363 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ANKS3Q6ZW76 656 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 FAM71DQ8N9W8 422 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 HERVK_113Q902F9 699 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 LBHD1Q9BQE6 289 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CLSTN3Q9BQT9 956 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 USP29Q9HBJ7 922 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 COX16Q9P0S2 106 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 TPX2Q9ULW0 747 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 MFHAS1Q9Y4C4 1052 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 WDR27A2RRH5 827 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 OR6C75A6NL08 312 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CAPN9O14815 690 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 TLL1O43897 1013 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ARHGEF15O94989 841 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 SOD2P04179 222 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 NCAM1P13591 858 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 GOT1P17174 413 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 LAG3P18627 525 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 SLC10A2Q12908 348 aaPredicted RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 GPR17Q13304 367 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 TRMT10CQ7L0Y3 403 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ZC3H18Q86VM9 953 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CYP4X1Q8N118 509 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 VPS52Q8N1B4 723 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 FIBCD1Q8N539 461 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ZCCHC9Q8N567 271 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CCDC197Q8NCU1 140 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 KCNV2Q8TDN2 545 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 RSAD2Q8WXG1 361 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 EDEM1Q92611 657 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 PGM2Q96G03 612 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 CNOT10Q9H9A5 744 aaKnown RBP12.56□□□□□ -0.4
HDAC6-230ENST00000488543 ETNK2Q9NVF9 386 aa12.56□□□□□ -0.4
HDAC6-230ENST00000488543 RCOR3Q9P2K3 495 aaPredicted RBP12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms