RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	FSCN3	Q9NQT6	498 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	DDX43	Q9NXZ2	648 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	IFNK	Q9P0W0	207 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	UXT	Q9UBK9	157 aa	Predicted RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	GTF3C4	Q9UKN8	822 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	PCDHB4	Q9Y5E5	795 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	MYLK	Q15746	1914 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ATXN2	Q99700	1313 aa	Known RBP	9.2	□□□□□ -0.94
USP4-213	ENST00000488520	ACACA	Q13085	2346 aa		9.2	□□□□□ -0.94
USP4-213	ENST00000488520	KNL1	Q8NG31	2342 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SPAAR	A0A1B0GVQ0	90 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	GOLGA6L3	A6NEY3	463 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	LGALS16	A8MUM7	142 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SCAMP3	O14828	347 aa	Known RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	ATXN7	O15265	892 aa	Predicted RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	NOL4	O94818	638 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	CCDC172	P0C7W6	258 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	KRT5	P13647	590 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	HNRNPL	P14866	589 aa	Known RBP eCLIP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	HDC	P19113	662 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	CD58	P19256	250 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	PON1	P27169	355 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	OPRD1	P41143	372 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	CDH8	P55286	799 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	RPL10A	P62906	217 aa	Known RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	CUL2	Q13617	745 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	NR1I3	Q14994	352 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	ACAP1	Q15027	740 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	NFE2	Q16621	373 aa	Predicted RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	ARHGAP44	Q17R89	818 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SOWAHA	Q2M3V2	549 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	CRTC2	Q53ET0	693 aa	Predicted RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	MIIP	Q5JXC2	388 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SPOPL	Q6IQ16	392 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	RRAGA	Q7L523	313 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	UNC93A	Q86WB7	457 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	OSTM1	Q86WC4	334 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	FMNL3	Q8IVF7	1028 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	DRC7	Q8IY82	874 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	DEFB119	Q8N690	84 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SEMA4D	Q92854	862 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	JAKMIP2	Q96AA8	810 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	HEXIM2	Q96MH2	286 aa	Known RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	SPAG5	Q96R06	1193 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	ACBD6	Q9BR61	282 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	MED10	Q9BTT4	135 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	NT5C1A	Q9BXI3	368 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	XYLT2	Q9H1B5	865 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	RBSN	Q9H1K0	784 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	FAM124B	Q9H5Z6	455 aa	Predicted RBP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	TMEM74B	Q9NUR3	256 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	APEX2	Q9UBZ4	518 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	KLK13	Q9UKR3	277 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	KIAA1257	Q9ULG3	409 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	MMP17	Q9ULZ9	603 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	L1RE1	Q9UN81	338 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	DAAM1	Q9Y4D1	1078 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	9.19	□□□□□ -0.94
USP4-213	ENST00000488520	ITPR1	Q14643	2758 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	LAMA5	O15230	3695 aa		9.19	□□□□□ -0.94
USP4-213	ENST00000488520	FREM2	Q5SZK8	3169 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	TMEM8B	A6NDV4	472 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	KLF8	O95600	359 aa	Predicted RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	NFATC1	O95644	943 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	ENG	P17813	658 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	WARS	P23381	471 aa	Known RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	PTGER3	P43115	390 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	SLC6A11	P48066	632 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	SLC8A3	P57103	927 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	BPIFB4	P59827	614 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	ZXDB	P98169	803 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	GCNT1	Q02742	428 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	RAPGEF1	Q13905	1077 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	NUMA1	Q14980	2115 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	SYCP1	Q15431	976 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	CRY1	Q16526	586 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	EMC10	Q5UCC4	262 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	KLHDC7A	Q5VTJ3	777 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	TRIM65	Q6PJ69	517 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	C4orf50	Q6ZRC1	276 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	C11orf74	Q86VG3	221 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	RASSF3	Q86WH2	238 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	SPATA2L	Q8IUW3	424 aa	Predicted RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	ALLC	Q8N6M5	410 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	TXNDC5	Q8NBS9	432 aa	Known RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	CXorf38	Q8TB03	319 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	IQCD	Q96DY2	449 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	TRMT2B	Q96GJ1	504 aa	Known RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	TMEM176A	Q96HP8	235 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	MYRFL	Q96LU7	910 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	NAP1L5	Q96NT1	182 aa	Predicted RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	NUSAP1	Q9BXS6	441 aa	Known RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	PDCL3	Q9H2J4	239 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	PLCB1	Q9NQ66	1216 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	ENAM	Q9NRM1	1142 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	FAM207A	Q9NSI2	230 aa	Predicted RBP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	BCCIP	Q9P287	314 aa	Known RBP eCLIP	9.18	□□□□□ -0.94
USP4-213	ENST00000488520	DNAJC12	Q9UKB3	198 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	CDH9	Q9ULB4	789 aa		9.18	□□□□□ -0.94
USP4-213	ENST00000488520	CABIN1	Q9Y6J0	2220 aa		9.18	□□□□□ -0.94

Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms