RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 HSPA6P17066 643 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 BTF3P20290 206 aaKnown RBP3.82□□□□□ -1.8
SMC4-220ENST00000488017 DSC1Q08554 894 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 KIF5AQ12840 1032 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 COASYQ13057 564 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 SF3B4Q15427 424 aaKnown RBP eCLIP3.82□□□□□ -1.8
SMC4-220ENST00000488017 C9orf57Q5W0N0 161 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 LRIG3Q6UXM1 1119 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 C16orf82Q7Z2V1 217 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 RHPN2Q8IUC4 686 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 PPP1R35Q8TAP8 253 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 SUN3Q8TAQ9 357 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 FAM227BQ96M60 508 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 TRIM2Q9C040 744 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 NMRK2Q9NPI5 230 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 RXFP3Q9NSD7 469 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 CPNE7Q9UBL6 633 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 PNMA8BQ9ULN7 279 aaPredicted RBP3.82□□□□□ -1.8
SMC4-220ENST00000488017 MMP24Q9Y5R2 645 aa3.82□□□□□ -1.8
SMC4-220ENST00000488017 USP19O94966 1318 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 INAFM1C9JVW0 142 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 RHODO00212 210 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 KCNQ3O43525 872 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 KRT36O76013 467 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 GLUD1P00367 558 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 IL1R1P14778 569 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 CIITAP33076 1130 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 GLUD2P49448 558 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 DMWDQ09019 674 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 KCNAB1Q14722 419 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 ZNF718Q3SXZ3 478 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 ANXA2RQ3ZCQ2 193 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 ZNF672Q499Z4 452 aaPredicted RBP3.81□□□□□ -1.8
SMC4-220ENST00000488017 ZNF474Q6S9Z5 364 aaPredicted RBP3.81□□□□□ -1.8
SMC4-220ENST00000488017 DHRS13Q6UX07 377 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 ASB12Q8WXK4 309 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 AIFM3Q96NN9 605 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 ACO2Q99798 780 aaKnown RBP3.81□□□□□ -1.8
SMC4-220ENST00000488017 CHST8Q9H2A9 424 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 MAP6D1Q9H9H5 199 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 SPAG4Q9NPE6 437 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 HPSEQ9Y251 543 aa3.81□□□□□ -1.8
SMC4-220ENST00000488017 SRRM3A6NNA2 597 aaPredicted RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 SLC16A5O15375 505 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 FRS3O43559 492 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 TUSC2O75896 110 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 CYP1A2P05177 515 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 PRSS2P07478 247 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 BRAFP15056 766 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 IGHMBP2P38935 993 aaKnown RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 NEK2P51955 445 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 SEC61A1P61619 476 aaKnown RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 TTC39AQ5SRH9 613 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.8□□□□□ -1.8
SMC4-220ENST00000488017 Q6ZTK2 550 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 ARMC9Q7Z3E5 817 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 CTU1Q7Z7A3 348 aaKnown RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 SLC35G2Q8TBE7 412 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 IPCEF1Q8WWN9 437 aaPredicted RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 INPP4AQ96PE3 977 aaPredicted RBP3.8□□□□□ -1.8
SMC4-220ENST00000488017 C22orf23Q9BZE7 217 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 DTX4Q9Y2E6 619 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 PCDHB2Q9Y5E7 798 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 PTGDR2Q9Y5Y4 395 aa3.8□□□□□ -1.8
SMC4-220ENST00000488017 CAPN8A6NHC0 703 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 RGS14O43566 566 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 CT47B1P0C2W7 299 aaPredicted RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 FCGR1AP12314 374 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 ARSBP15848 533 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 MMP8P22894 467 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 PBX1P40424 430 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 CXCR3P49682 368 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 DLX5P56178 289 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 RPS16P62249 146 aaKnown RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 GPS2Q13227 327 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 C3orf38Q5JPI3 329 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 WBP2NLQ6ICG8 309 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 KYAT3Q6YP21 454 aaKnown RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 MUC20Q8N307 709 aaPredicted RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 OR52L2PQ8NGH6 319 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 TAAR9Q96RI9 348 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 B3GNT5Q9BYG0 378 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 DDX56Q9NY93 547 aaKnown RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 PLEKHB1Q9UF11 243 aaPredicted RBP3.79□□□□□ -1.8
SMC4-220ENST00000488017 FZD10Q9ULW2 581 aa3.79□□□□□ -1.8
SMC4-220ENST00000488017 A0A1B0GVT2 93 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 BECN2A8MW95 431 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 ZKSCAN1P17029 563 aaPredicted RBP3.78□□□□□ -1.8
SMC4-220ENST00000488017 SLC8A1P32418 973 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 STAT6P42226 847 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 ABATP80404 500 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 TRAF2Q12933 501 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 CNGA2Q16280 664 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 KIAA1755Q5JYT7 1200 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 OTUD1Q5VV17 481 aaPredicted RBP3.78□□□□□ -1.8
SMC4-220ENST00000488017 CREB3L2Q70SY1 520 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 LAS2Q8IYD9 372 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 DUX5Q96PT3 197 aa3.78□□□□□ -1.8
SMC4-220ENST00000488017 C1QTNF4Q9BXJ3 329 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms