RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 METAP1P53582 386 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 CCT2P78371 535 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 AKAP17AQ02040 695 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 ZBTB16Q05516 673 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 IFRD2Q12894 506 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 KLRB1Q12918 225 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NR5A1Q13285 461 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 ZNF177Q13360 481 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 CALCRLQ16602 461 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 SOWAHAQ2M3V2 549 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 LACTB2Q53H82 288 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 PRR30Q53SZ7 412 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 HECTD3Q5T447 861 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 PPP1R26Q5T8A7 1209 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 SNX30Q5VWJ9 437 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NAPEPLDQ6IQ20 393 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 SPNS3Q6ZMD2 512 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 SV2AQ7L0J3 742 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 EFL1Q7Z2Z2 1120 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 MCEMP1Q8IX19 187 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 AADATQ8N5Z0 425 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 OR2T34Q8NGX1 318 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 PMEPA1Q969W9 287 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 MYO19Q96H55 970 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 C8orf48Q96LL4 319 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 MDFIQ99750 246 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 SYT15Q9BQS2 421 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NTPCRQ9BSD7 190 aaKnown RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 FOXP3Q9BZS1 431 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 CIPCQ9C0C6 399 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 RSPH9Q9H1X1 276 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 IKZF4Q9H2S9 585 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 PREBQ9HCU5 417 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 CYLDQ9NQC7 956 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 OSER1Q9NX31 292 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 FBXL12Q9NXK8 326 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 NLGN3Q9NZ94 848 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 IL37Q9NZH6 218 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 RABGEF1Q9UJ41 708 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 KCND3Q9UK17 655 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 ITGB1BP2Q9UKP3 347 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 VPS4AQ9UN37 437 aa5.06□□□□□ -1.6
USP4-209ENST00000475873 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.06□□□□□ -1.6
USP4-209ENST00000475873 MYH11P35749 1972 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 NYNRINQ9P2P1 1898 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 A0A0B4J269 797 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 FAM92AA1XBS5 289 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 EME2A4GXA9 379 aaPredicted RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 TCP11X1B4DZS4 312 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 CLDN5O00501 218 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 SCAMP1O15126 338 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 NKX2-8O15522 239 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 HNRNPRO43390 633 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 TCEA3O75764 348 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 BAG4O95429 457 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 DNTTP04053 509 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 LIFP15018 202 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 PDIA3P30101 505 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 HLA-FP30511 346 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 POLR2BP30876 1174 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 ACOT2P49753 483 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 TUBP50607 506 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ADPRHP54922 357 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 EIF4HQ15056 248 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 POM121L1PQ3SYA9 428 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 SV2CQ496J9 727 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ZNF542PQ5EBM4 170 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ZNF776Q68DI1 518 aaPredicted RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 GALNT17Q6IS24 598 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 CRELD2Q6UXH1 353 aaPredicted RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 Q6ZUG5 572 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 C1orf186Q6ZWK4 172 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 USP30Q70CQ3 517 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 RAB11FIP2Q7L804 512 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 TIPARPQ7Z3E1 657 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 KCNK18Q7Z418 384 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ANKS1BQ7Z6G8 1248 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ADIPOR2Q86V24 386 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 IQCHQ86VS3 1027 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 SLC22A18ASQ8N1D0 253 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 FBXO39Q8N4B4 442 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 C1orf127Q8N9H9 656 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 KRI1Q8N9T8 703 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 ZSCAN1Q8NBB4 408 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 RDH13Q8NBN7 331 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ZSWIM2Q8NEG5 633 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 FBXO32Q969P5 355 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 SKA1Q96BD8 255 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 LURAP1Q96LR2 239 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 CEP295NLQ96MC4 621 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 NOX5Q96PH1 765 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 TSPAN18Q96SJ8 248 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 REPIN1Q9BWE0 567 aaKnown RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 AGXT2Q9BYV1 514 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 ZNF518BQ9C0D4 1074 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 MAGEC2Q9UBF1 373 aaPredicted RBP5.05□□□□□ -1.6
USP4-209ENST00000475873 PISDQ9UG56 409 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 KLF15Q9UIH9 416 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 SIX4Q9UIU6 781 aa5.05□□□□□ -1.6
USP4-209ENST00000475873 PPM1HQ9ULR3 514 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms