RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 COL5A1P20908 1838 aaPredicted RBP13.16□□□□□ -0.3
SKA3-206ENST00000475251 H0Y8X5 98 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 VILLO15195 856 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 MAPK13O15264 365 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 NR3C1P04150 777 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 JUPP14923 745 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 CD58P19256 250 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 HOXD9P28356 352 aaPredicted RBP13.16□□□□□ -0.3
SKA3-206ENST00000475251 YWHAGP61981 247 aaKnown RBP eCLIP13.16□□□□□ -0.3
SKA3-206ENST00000475251 RACK1P63244 317 aaKnown RBP13.16□□□□□ -0.3
SKA3-206ENST00000475251 CUL4BQ13620 913 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 PPP1R26Q5T8A7 1209 aaPredicted RBP13.16□□□□□ -0.3
SKA3-206ENST00000475251 CEP135Q66GS9 1140 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 TMEM215Q68D42 235 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 ZNF776Q68DI1 518 aaPredicted RBP13.16□□□□□ -0.3
SKA3-206ENST00000475251 USP30Q70CQ3 517 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 CHST9Q7L1S5 443 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 MARCH9Q86YJ5 346 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 CEP57L1Q8IYX8 460 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 BAP1Q92560 729 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 FAXDC2Q96IV6 333 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 EXOC1Q9NV70 894 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 CLEC4EQ9ULY5 219 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 TMEM131Q92545 1883 aa13.16□□□□□ -0.3
SKA3-206ENST00000475251 SMG1Q96Q15 3661 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 A0A1B0GTQ1 180 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 PLK4O00444 970 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 ENC1O14682 589 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 CAPN9O14815 690 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 ATXN7O15265 892 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 CALUO43852 315 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 RFPL3O75679 317 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 LDOC1O95751 146 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 LATS1O95835 1130 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 DLDP09622 509 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 SLFN14P0C7P3 912 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 ABCB4P21439 1286 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 CASP1P29466 404 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 HLA-FP30511 346 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 AFMP43652 599 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 VAMP7P51809 220 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 RPS14P62263 151 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 ENPEPQ07075 957 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 TRIP4Q15650 581 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 KIAA0895LQ68EN5 471 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 INTS8Q75QN2 995 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.15□□□□□ -0.3
SKA3-206ENST00000475251 TMA16Q96EY4 203 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 HEXIM2Q96MH2 286 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 ELF4Q99607 663 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 ARID3AQ99856 593 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 IRX2Q9BZI1 471 aaPredicted RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 PRSS16Q9NQE7 514 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 GGA2Q9UJY4 613 aa13.15□□□□□ -0.3
SKA3-206ENST00000475251 TPX2Q9ULW0 747 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 HBS1LQ9Y450 684 aaKnown RBP13.15□□□□□ -0.3
SKA3-206ENST00000475251 GCN1Q92616 2671 aaKnown RBP13.15□□□□□ -0.31
SKA3-206ENST00000475251 CELSR3Q9NYQ7 3312 aa13.15□□□□□ -0.31
SKA3-206ENST00000475251 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 A0A1W2PPC4 97 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 CAPN8A6NHC0 703 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 KCNK3O14649 394 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 RNASEH1O60930 286 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 ZBED1O96006 694 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 ITGAVP06756 1048 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 PABPC1P11940 636 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 KRT13P13646 458 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 POLR2EP19388 210 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 EIF2S3P41091 472 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 ARRB1P49407 418 aaPredicted RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 IL9RQ01113 521 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 STK4Q13043 487 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 RAB41Q5JT25 222 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 ADGRF1Q5T601 910 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 PIGZQ86VD9 579 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 KIAA0895Q8NCT3 520 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 GANCQ8TET4 914 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 RNF139Q8WU17 664 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 CYB5D2Q8WUJ1 264 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 CRELD1Q96HD1 420 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 CNDP2Q96KP4 475 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 NRSN2Q9GZP1 204 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 KCTD10Q9H3F6 313 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 APOBEC3GQ9HC16 384 aaKnown RBP13.14□□□□□ -0.31
SKA3-206ENST00000475251 ABCB8Q9NUT2 735 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 STOML2Q9UJZ1 356 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 AK5Q9Y6K8 562 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 SLCO1B1Q9Y6L6 691 aa13.14□□□□□ -0.31
SKA3-206ENST00000475251 MUC22E2RYF6 1773 aaPredicted RBP13.13□□□□□ -0.31
SKA3-206ENST00000475251 LRRC72A6NJI9 287 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 TKTL1P51854 596 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 ST8SIA6P61647 398 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 ILKQ13418 452 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 ZNF394Q53GI3 561 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 SLC45A4Q5BKX6 768 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 MPP7Q5T2T1 576 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 MBLAC2Q68D91 279 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 ARHGAP17Q68EM7 881 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 PM20D1Q6GTS8 502 aa13.13□□□□□ -0.31
SKA3-206ENST00000475251 LAYNQ6UX15 382 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms