RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 HEATR9A2RTY3 570 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 LATO43561 262 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 TLR5O60602 858 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 RNGTTO60942 597 aaKnown RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 CNTN5O94779 1100 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 IL18RAPO95256 599 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 PLS3P13797 630 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 TGM2P21980 687 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 GNLYP22749 145 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 UQCRFS1P47985 274 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 TGIF1Q15583 401 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 ZXDCQ2QGD7 858 aaPredicted RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 Q6ZUG5 572 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 RAB11FIP2Q7L804 512 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 TADA2BQ86TJ2 420 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 SPATS2Q86XZ4 545 aaKnown RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 SLC25A45Q8N413 288 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 ARRDC3Q96B67 414 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 EPAS1Q99814 870 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 OMDQ99983 421 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 SLC29A3Q9BZD2 475 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 TMEM245Q9H330 911 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 PRDM8Q9NQV8 689 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 KLHL11Q9NVR0 708 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 LARSQ9P2J5 1176 aaKnown RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 ITGA11Q9UKX5 1188 aa8.45□□□□□ -1.06
USP54-211ENST00000474929 COL27A1Q8IZC6 1860 aaPredicted RBP8.45□□□□□ -1.06
USP54-211ENST00000474929 ZFC3H1O60293 1989 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 SVILO95425 2214 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 MED13LQ71F56 2210 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 A0A0B4J269 797 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 EME2A4GXA9 379 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 ZNF891A8MT65 544 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 H3BM21 787 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SCAMP1O15126 338 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SEMA7AO75326 666 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 PIAS2O75928 621 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 CLDN1O95832 211 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 ATP5BP06576 529 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 GUCY2CP25092 1073 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 VARSP26640 1264 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 UGT1A5P35504 534 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 ATP5C1P36542 298 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 ZNF445P59923 1031 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 HNRNPKP61978 463 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP54-211ENST00000474929 CYP4F2P78329 520 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 IFRD2Q12894 506 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 ORC2Q13416 577 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 SETMARQ53H47 684 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 TMEM164Q5U3C3 297 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 KLHDC10Q6PID8 442 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SND1Q7KZF4 910 aaKnown RBP eCLIP8.44□□□□□ -1.06
USP54-211ENST00000474929 EFL1Q7Z2Z2 1120 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 VASH2Q86V25 355 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 DAW1Q8N136 415 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 ZNF557Q8N988 423 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 FAM174AQ8TBP5 190 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 MYCBPAPQ8TBZ2 947 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 CACTINQ8WUQ7 758 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 BHMTQ93088 406 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 MARVELD3Q96A59 401 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 KLHDC7BQ96G42 594 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 PCED1BQ96HM7 432 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 PIWIL1Q96J94 861 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 TMEM74Q96NL1 305 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SLC12A9Q9BXP2 914 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 AGXT2Q9BYV1 514 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 RAB34Q9BZG1 259 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 DCLK3Q9C098 648 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 RSPH9Q9H1X1 276 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 CCSER2Q9H7U1 834 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 EPB41L5Q9HCM4 733 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 ZNF71Q9NQZ8 489 aaPredicted RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 TLR8Q9NR97 1041 aaKnown RBP8.44□□□□□ -1.06
USP54-211ENST00000474929 KCND2Q9NZV8 630 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 KCNJ14Q9UNX9 436 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 DNM3Q9UQ16 869 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SNX9Q9Y5X1 595 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 ESPL1Q14674 2120 aa8.44□□□□□ -1.06
USP54-211ENST00000474929 SLC12A8A0AV02 714 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 PRR19A6NJB7 356 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 EFCAB7A8K855 629 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 C10orf142B7Z368 130 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 PRAMEF26H0Y7S4 382 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 STMND1H3BQB6 276 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 GREM1O60565 184 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 RNASEH2AO75792 299 aaKnown RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 ZDHHC11BP0C7U3 371 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 COL8A1P27658 744 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 POLR2BP30876 1174 aaKnown RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 KRT2P35908 639 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 CCT6AP40227 531 aaKnown RBP8.43□□□□□ -1.06
USP54-211ENST00000474929 KCNMA1Q12791 1236 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 NR0B2Q15466 257 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 FYB2Q5VWT5 728 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 SLFN12LQ6IEE8 588 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 BLOC1S2Q6QNY1 142 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 Q6ZNB5 142 aa8.43□□□□□ -1.06
USP54-211ENST00000474929 DTX1Q86Y01 620 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms