RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 DNAJB5O75953 348 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 C1QL1O75973 258 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ESRRBO95718 433 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 RARBP10826 455 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 CXCR5P32302 372 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 PRIM2P49643 509 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF135P52742 658 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ARFIP2P53365 341 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 MXRA7P84157 204 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 MPP3Q13368 585 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 PICALMQ13492 652 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 CD300EQ496F6 205 aaPredicted RBP4.74□□□□□ -1.65
VPS13A-210ENST00000471439 EMC10Q5UCC4 262 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 STRIP1Q5VSL9 837 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF790Q6PG37 636 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 FOXR2Q6PJQ5 311 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 Q6ZNX1 250 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 SESTD1Q86VW0 696 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF34Q8IZ26 560 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 KRT78Q8N1N4 520 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM199Q8N511 208 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 SUMF1Q8NBK3 374 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 FUBP1Q96AE4 644 aaKnown RBP4.74□□□□□ -1.65
VPS13A-210ENST00000471439 APIPQ96GX9 242 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 PNKPQ96T60 521 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM39BQ9GZU3 492 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 CASS4Q9NQ75 786 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 ZDHHC8Q9ULC8 765 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 PCNX1Q96RV3 2341 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 KIF20BQ96Q89 1820 aa4.74□□□□□ -1.65
VPS13A-210ENST00000471439 SMCHD1A6NHR9 2005 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 NF1P21359 2839 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SALL1Q9NSC2 1324 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 TMEM233B4DJY2 109 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 LOC730098B7Z3J9 87 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 J3QKU1 62 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SLC30A4O14863 429 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 UNC5CO95185 931 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 GNAI3P08754 354 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 BRAFP15056 766 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 ALDH5A1P51649 535 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SUMO3P55854 103 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 GNAI1P63096 354 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SIM1P81133 766 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 FMO1Q01740 532 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SF3B3Q15393 1217 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 CCDC6Q16204 474 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 C3orf38Q5JPI3 329 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 ANO1Q5XXA6 986 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 XRRA1Q6P2D8 792 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 TSHZ1Q6ZSZ6 1077 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 PPP1R42Q7Z4L9 355 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SKAP1Q86WV1 359 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF575Q86XF7 245 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 LIX1LQ8IVB5 337 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 PDPRQ8NCN5 879 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SIMC1Q8NDZ2 872 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 PABPC5Q96DU9 382 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 PTCD3Q96EY7 689 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 BOD1Q96IK1 185 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 STRBPQ96SI9 672 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 AIFM2Q9BRQ8 373 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 IMPG2Q9BZV3 1241 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 LRRC27Q9C0I9 530 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 TINAGL1Q9GZM7 467 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 CLMPQ9H6B4 373 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SMURF2Q9HAU4 748 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 CNNM1Q9NRU3 951 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 GNL3LQ9NVN8 582 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 TBCCD1Q9NVR7 557 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 PIH1D1Q9NWS0 290 aaKnown RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 MED16Q9Y2X0 877 aa4.73□□□□□ -1.65
VPS13A-210ENST00000471439 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.73□□□□□ -1.65
VPS13A-210ENST00000471439 SIP14410 1827 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ERVV-1B6SEH8 477 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 M0QYG6 137 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 SUN1O94901 812 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 KIF20AO95235 890 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 IFIT2P09913 472 aaKnown RBP4.72□□□□□ -1.65
VPS13A-210ENST00000471439 GATA3P23771 443 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 KCNJ5P48544 419 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 CNGA2Q16280 664 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 PRR16Q569H4 304 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF362Q5T0B9 420 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ARMC6Q6NXE6 501 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ANKRD33Q7Z3H0 272 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 PRIMA1Q86XR5 153 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ADGRG3Q86Y34 549 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 TRPV1Q8NER1 839 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 NLGN4YQ8NFZ3 816 aaPredicted RBP4.72□□□□□ -1.65
VPS13A-210ENST00000471439 LPIN2Q92539 896 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 USP6NLQ92738 828 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 PHKBQ93100 1093 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 DPH1Q9BZG8 443 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 ZNF700Q9H0M5 742 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 NUP62CLQ9H1M0 184 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 GPR35Q9HC97 309 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 KCTD5Q9NXV2 234 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 FOXJ2Q9P0K8 574 aa4.72□□□□□ -1.65
VPS13A-210ENST00000471439 CFAP97Q9P2B7 532 aa4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms