RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 GOT1L1Q8NHS2 421 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 DIS3LQ8TF46 1054 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ZNF845Q96IR2 970 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PBKQ96KB5 322 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CNDP1Q96KN2 507 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PIGSQ96S52 555 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 NTPCRQ9BSD7 190 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 DNAI2Q9GZS0 605 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 BHMT2Q9H2M3 363 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SMOC2Q9H3U7 446 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 JMJD4Q9H9V9 463 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 CERS4Q9HA82 394 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SLAMF7Q9NQ25 335 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 INTS10Q9NVR2 710 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 ORC3Q9UBD5 711 aaPredicted RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 TRAF3IP3Q9Y228 551 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHB1Q9Y5F3 818 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGB5Q9Y5G0 923 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA9Q9Y5G4 932 aaKnown RBP5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA8Q9Y5G5 932 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA7Q9Y5G6 932 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA6Q9Y5G7 932 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 PCDHGA3Q9Y5H0 932 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 FLT1P17948 1338 aa5.22□□□□□ -1.57
CCDC88A-210ENST00000468534 SRGAP2O75044 1071 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 VPS4BO75351 444 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 STAM2O75886 525 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 SGPL1O95470 568 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF853P0CG23 659 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 TFEBP19484 476 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 IL11P20809 199 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ACTN2P35609 894 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 NDUFV1P49821 464 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 CCT8P50990 548 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 POU6F2P78424 691 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 PRKG1Q13976 671 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 KRT32Q14532 448 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 POSTNQ15063 836 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 UAP1L1Q3KQV9 507 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ARL13BQ3SXY8 428 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ODF2Q5BJF6 829 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF782Q6ZMW2 699 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 TMPRSS9Q7Z410 1059 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 LRRTM4Q86VH4 590 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 LURAP1LQ8IV03 231 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 OR8H3Q8N146 312 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 VPS52Q8N1B4 723 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 NUP93Q8N1F7 819 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 BICD1Q96G01 975 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 COG8Q96MW5 612 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 EYA3Q99504 573 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 FSD1Q9BTV5 496 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ACTRT3Q9BYD9 372 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 NCOR1P1Q9H4R4 102 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 VPS37BQ9H9H4 285 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 MRPS18AQ9NVS2 196 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 GRHPRQ9UBQ7 328 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 NOSIPQ9Y314 301 aaKnown RBP5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 MRFAP1Q9Y605 127 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 USP19O94966 1318 aa5.21□□□□□ -1.58
CCDC88A-210ENST00000468534 LINC01548A6NM66 108 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 E7ENX8 843 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 FAM227AF5H4B4 570 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 F2RL2O00254 374 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 NCK2O43639 380 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TRIAP1O43715 76 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 PALMO75781 387 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 GNAI3P08754 354 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 FERP16591 822 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 SKIV2L2P42285 1042 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 PIK3CBP42338 1070 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ASMTP46597 345 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CTCFP49711 727 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF135P52742 658 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 AP2B1P63010 937 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 GNAI1P63096 354 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TAP2Q03519 686 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ZBTB17Q13105 803 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CUL4AQ13619 759 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TAF5Q15542 800 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 FILIP1LQ4L180 1135 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 KHDC1Q4VXA5 237 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 MTX3Q5HYI7 312 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC122Q5T0U0 273 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 SUMO4Q6EEV6 95 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 DARS2Q6PI48 645 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 SYNE3Q6ZMZ3 975 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CCDC170Q8IYT3 715 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 ZNF366Q8N895 744 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 GOLGA6L2Q8N9W4 650 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 PSD4Q8NDX1 1056 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 POC1BQ8TC44 478 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 OTUD7AQ8TE49 926 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 CTNNBL1Q8WYA6 563 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 RFKQ969G6 155 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 FKBP10Q96AY3 582 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 RMDN2Q96LZ7 410 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TEKT5Q96M29 485 aa5.2□□□□□ -1.58
CCDC88A-210ENST00000468534 TIGD1Q96MW7 591 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms