RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CMC1Q7Z7K0 106 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SPATA24Q86W54 205 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SULF1Q8IWU6 871 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SCUBE3Q8IX30 993 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SHCBP1Q8NEM2 672 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 DCPSQ96C86 337 aaKnown RBP12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SPATA33Q96N06 139 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 LPIN3Q9BQK8 851 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 PDGFCQ9NRA1 345 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 CNTN3Q9P232 1028 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 MFHAS1Q9Y4C4 1052 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 CITO14578 2027 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 DNAJC6O75061 913 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SLC1A6P48664 564 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 COPAP53621 1224 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 SLC18A2Q05940 514 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 TAPT1Q6NXT6 567 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 MARK2Q7KZI7 788 aaKnown RBP12.81□□□□□ -0.36
HDAC4-208ENST00000463007 CAND1Q86VP6 1230 aaKnown RBP12.81□□□□□ -0.36
HDAC4-208ENST00000463007 CHSY1Q86X52 802 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 C10orf107Q8IVU9 208 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 ZBTB8OSQ8IWT0 167 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 CEP70Q8NHQ1 597 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 B3GNT5Q9BYG0 378 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 GRIP2Q9C0E4 1043 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 S100A14Q9HCY8 104 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 PSAT1Q9Y617 370 aa12.81□□□□□ -0.36
HDAC4-208ENST00000463007 RBM47A0AV96 593 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 GPR25O00155 361 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 ITGB3P05106 788 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 VCLP18206 1134 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 SPDYAQ5MJ70 313 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 NXNQ6DKJ4 435 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 MYLK4Q86YV6 388 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 ADGRF2Q8IZF7 708 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 C7orf31Q8N865 590 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 C1orf127Q8N9H9 656 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 SNRNP27Q8WVK2 155 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 PPP2R3CQ969Q6 453 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 AZIN2Q96A70 460 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 HIC2Q96JB3 615 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 TRAPPC9Q96Q05 1148 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 SMARCAD1Q9H4L7 1026 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 MROH8Q9H579 483 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 DHX35Q9H5Z1 703 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 ZNF236Q9UL36 1845 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 TPP1O14773 563 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 HBP1O60381 514 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 SIN3BO75182 1162 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 TRUB2O95900 331 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 APOEP02649 317 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 AMHP03971 560 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 BPGMP07738 259 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 TFE3P19532 575 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 MRPS22P82650 360 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 GBE1Q04446 702 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 TBL3Q12788 808 aaKnown RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 CYTH1Q15438 398 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 DNAL1Q4LDG9 190 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 ZNF667Q5HYK9 610 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 FRMD7Q6ZUT3 714 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 XYLT1Q86Y38 959 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 FAM156AQ8NDB6 213 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 PPP4R1Q8TF05 950 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 EMID1Q96A84 441 aaPredicted RBP12.8□□□□□ -0.36
HDAC4-208ENST00000463007 ZNF778Q96MU6 729 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 CCDC106Q9BWC9 280 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 KLC2Q9H0B6 622 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 INPP5FQ9Y2H2 1132 aa12.8□□□□□ -0.36
HDAC4-208ENST00000463007 E7ESA3 106 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 TGDSO95455 350 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 MLH1P40692 756 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CCR10P46092 362 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CDK7P50613 346 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 YWHAEP62258 255 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 ATG14Q6ZNE5 492 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 SH2D5Q6ZV89 423 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 MMADHCQ9H3L0 296 aaPredicted RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 POPDC2Q9HBU9 364 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PREBQ9HCU5 417 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 TXNDC16Q9P2K2 825 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CROCCQ5TZA2 2017 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 HMX2A2RU54 273 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 SLC15A5A6NIM6 579 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 NOP56O00567 594 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 MAGEC1O60732 1142 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 TNNC2P02585 160 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 ERVK-10P10266 1014 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 STIP1P31948 543 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 CLCN3P51790 818 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 RAP1GDS1P52306 607 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 TAP1Q03518 808 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PDK3Q15120 406 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 ZNF792Q3KQV3 632 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 LDLRAD1Q5T700 205 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 PIWIL2Q8TC59 973 aaKnown RBP12.79□□□□□ -0.36
HDAC4-208ENST00000463007 FNIP1Q8TF40 1166 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 OPTNQ96CV9 577 aa12.79□□□□□ -0.36
HDAC4-208ENST00000463007 KLHL4Q9C0H6 718 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms