RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 TSSK1BQ9BXA7 367 aa15.88■□□□□ 0.13
LMNB1-203ENST00000460265 VPS11Q9H270 941 aa15.88■□□□□ 0.13
LMNB1-203ENST00000460265 DDIT4Q9NX09 232 aa15.88■□□□□ 0.13
LMNB1-203ENST00000460265 DDX43Q9NXZ2 648 aaKnown RBP15.88■□□□□ 0.13
LMNB1-203ENST00000460265 MFHAS1Q9Y4C4 1052 aa15.88■□□□□ 0.13
LMNB1-203ENST00000460265 ABCG1P45844 678 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 KPNB1Q14974 876 aaKnown RBP15.87■□□□□ 0.13
LMNB1-203ENST00000460265 EFHC2Q5JST6 749 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 HACE1Q8IYU2 909 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 UBR7Q8N806 425 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 TMEM40Q8WWA1 233 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 IFT43Q96FT9 208 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 SPATA16Q9BXB7 569 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 KRT82Q9NSB4 513 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 ETNK2Q9NVF9 386 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 SLC24A2Q9UI40 661 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 RABGEF1Q9UJ41 708 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 KRT38O76015 456 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 CPA2P48052 419 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 NOMO1Q15155 1222 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 MTDHQ86UE4 582 aaKnown RBP15.87■□□□□ 0.13
LMNB1-203ENST00000460265 NUDCD3Q8IVD9 361 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 NIPA2Q8N8Q9 360 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 SMYD2Q9NRG4 433 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 HOXA11P31270 313 aaPredicted RBP15.87■□□□□ 0.13
LMNB1-203ENST00000460265 CDH5P33151 784 aaPredicted RBP15.87■□□□□ 0.13
LMNB1-203ENST00000460265 ARFIP2P53365 341 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 SV2CQ496J9 727 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 TRNP1Q6NT89 227 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 LRRC74BQ6ZQY2 392 aa15.87■□□□□ 0.13
LMNB1-203ENST00000460265 CLUHO75153 1309 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 C2orf71A6NGG8 1288 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 CCDC160A6NGH7 325 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 USP17L7P0C7H9 530 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 YWHAZP63104 245 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PRPF39Q86UA1 669 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 ANKRD52Q8NB46 1076 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 GTF3C2Q8WUA4 911 aaPredicted RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 TFB1MQ8WVM0 346 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 CDKL2Q92772 493 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 MECRQ9BV79 373 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PRKAG3Q9UGI9 489 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 LNPEPQ9UIQ6 1025 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 MEIS3P2A8K0S8 358 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 EEF2KO00418 725 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 SUPT3HO75486 399 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 KRT36O76013 467 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PENKP01210 267 aaPredicted RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 F7P08709 466 aaPredicted RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 SERPINB3P29508 390 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 HDAC4P56524 1084 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PITX1P78337 314 aaPredicted RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 EFHC1Q5JVL4 640 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 DRICH1Q6PGQ1 229 aaPredicted RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 RSPH3Q86UC2 560 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PAF1Q8N7H5 531 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 NAT8LQ8N9F0 302 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 COLGALT1Q8NBJ5 622 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 INPP5DQ92835 1189 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 GRAMD1AQ96CP6 724 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 ACSS3Q9H6R3 686 aa15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PPARGC1AQ9UBK2 798 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 PAIP2BQ9ULR5 123 aaKnown RBP15.86■□□□□ 0.13
LMNB1-203ENST00000460265 RBM47A0AV96 593 aaKnown RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 SPTLC1O15269 473 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UGT1A9O60656 530 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ACAP1Q15027 740 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 MARCH8Q5T0T0 291 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ZCCHC23Q6ZST2 131 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 B3GALNT2Q8NCR0 500 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 SMC1BQ8NDV3 1235 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 USP6NLQ92738 828 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UPF1Q92900 1129 aaKnown RBP eCLIP15.85■□□□□ 0.138e-12■■■□□ 18.5
LMNB1-203ENST00000460265 CELF6Q96J87 481 aaKnown RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 KCNK16Q96T55 309 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UGT1A7Q9HAW7 530 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UGT1A10Q9HAW8 530 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UGT1A8Q9HAW9 530 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 IPPQ9Y573 584 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 WDR27A2RRH5 827 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 GOLGA8TH3BQL2 631 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 DCTN3O75935 186 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 SNRPAP09012 282 aaKnown RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 FGFR1P11362 822 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 THPOP40225 353 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 CPT1AP50416 773 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 TPI1P60174 286 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 MTFR1Q15390 333 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ATP2A3Q93084 1043 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 NMD3Q96D46 503 aaKnown RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 METTL18O95568 372 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ABHD2P08910 425 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ITKQ08881 620 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 FSCN1Q16658 493 aaKnown RBP15.85■□□□□ 0.13
LMNB1-203ENST00000460265 NLRP9Q7RTR0 991 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 UNC5BQ8IZJ1 945 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ARL10Q8N8L6 244 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 SENP8Q96LD8 212 aa15.85■□□□□ 0.13
LMNB1-203ENST00000460265 ULBP1Q9BZM6 244 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms