RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 SPTLC3Q9NUV7 552 aa17.76■□□□□ 0.43
PRPF40A-204ENST00000450303 SEPT11Q9NVA2 429 aaKnown RBP17.76■□□□□ 0.43
PRPF40A-204ENST00000450303 ZNF510Q9Y2H8 683 aa17.76■□□□□ 0.43
PRPF40A-204ENST00000450303 THADAQ6YHU6 1953 aa17.76■□□□□ 0.43
PRPF40A-204ENST00000450303 PRRT4C9JH25 899 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 CYLC1P35663 651 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 MAPK8IP2Q13387 824 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 PUM1Q14671 1186 aaKnown RBP eCLIP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 CSRP2Q16527 193 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 USP39Q53GS9 565 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 TAF3Q5VWG9 929 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 EGFLAMQ63HQ2 1017 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 E4F1Q66K89 784 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 HGSNATQ68CP4 663 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 PPP1R2P3Q6NXS1 205 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 WDR59Q6PJI9 974 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 PRR23CQ6ZRP0 262 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 NOP9Q86U38 636 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 PGBD3Q8N328 593 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 KIAA1524Q8TCG1 905 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 RLN3Q8WXF3 142 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 ZC3H10Q96K80 434 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 MIS12Q9H081 205 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 KCNF1Q9H3M0 494 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 SMOC1Q9H4F8 434 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 POLMQ9NP87 494 aaPredicted RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 ACP6Q9NPH0 428 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 CNGB3Q9NQW8 809 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 DLL3Q9NYJ7 618 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 BCCIPQ9P287 314 aaKnown RBP eCLIP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 NOCTQ9UK39 431 aaKnown RBP17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 PCDHGC3Q9UN70 934 aa17.75■□□□□ 0.43
PRPF40A-204ENST00000450303 TCRBV21S2A2A0A5A6 115 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 PRR5-ARHGAP8B1AHC4 643 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 MSI1O43347 362 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 AKR1B10O60218 316 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 GDF9O60383 454 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 LRP3O75074 770 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 ALDH1A2O94788 518 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 EPN2O95208 641 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 BCKDHBP21953 392 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 FECHP22830 423 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 CHKAP35790 457 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 ARHGAP8P85298 464 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 SF3A2Q15428 464 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 HSF5Q4G112 596 aaPredicted RBP17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 FYB2Q5VWT5 728 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 DENND1BQ6P3S1 775 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 DGLUCYQ7Z3D6 616 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 CCDC170Q8IYT3 715 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 FRMD1Q8N878 549 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 TMEM35BQ8NCS4 154 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 HMGB4Q8WW32 186 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 NHEJ1Q9H9Q4 299 aaPredicted RBP17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 ABCC13Q9NSE7 274 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 OLA1Q9NTK5 396 aaKnown RBP17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 ARHGAP20Q9P2F6 1191 aa17.74■□□□□ 0.43
PRPF40A-204ENST00000450303 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 TSPAN3O60637 253 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 RHOBTB1O94844 696 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 IPO7O95373 1038 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 MMEP08473 750 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 NTSR1P30989 418 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 EIF4A3P38919 411 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 ATXN1P54253 815 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 TRIP4Q15650 581 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 ELF2Q15723 593 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 ZNF571Q7Z3V5 609 aaPredicted RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 MSANTD4Q8NCY6 345 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 SLC20A1Q8WUM9 679 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 DDX1Q92499 740 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 PLD4Q96BZ4 506 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 LOXL4Q96JB6 756 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 NOX5Q96PH1 765 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 CHP1Q99653 195 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 LHX5Q9H2C1 402 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 ST7Q9NRC1 585 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 CDV3Q9UKY7 258 aaKnown RBP17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 CLEC4EQ9ULY5 219 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 STARD13Q9Y3M8 1113 aa17.73■□□□□ 0.43
PRPF40A-204ENST00000450303 LSM8O95777 96 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 PENKP01210 267 aaPredicted RBP17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 HOXB2P14652 356 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 GPD2P43304 727 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 SNX16P57768 344 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 FMO1Q01740 532 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 CREB5Q02930 508 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 TRMT11Q7Z4G4 463 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 SCUBE3Q8IX30 993 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 CHPFQ8IZ52 775 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 SCML4Q8N228 414 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 KCNV2Q8TDN2 545 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 DDI1Q8WTU0 396 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 HSFY1Q96LI6 401 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 LUC7LQ9NQ29 371 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 FBXO10Q9UK96 956 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 HBS1LQ9Y450 684 aaKnown RBP17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 RAD54BQ9Y620 910 aa17.72■□□□□ 0.43
PRPF40A-204ENST00000450303 NUP205Q92621 2012 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms