RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 GRM2Q14416 872 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 PDGFRLQ15198 375 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 MS4A13Q5J8X5 152 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 POLNQ7Z5Q5 900 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 RHOT1Q8IXI2 618 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 FAM217AQ8IXS0 508 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 CPXM2Q8N436 756 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 OSCP1Q8WVF1 389 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 RSAD2Q8WXG1 361 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 SNRNP25Q9BV90 132 aaKnown RBP16.34■□□□□ 0.21
USP40-206ENST00000443711 IRX2Q9BZI1 471 aaPredicted RBP16.34■□□□□ 0.21
USP40-206ENST00000443711 SIK2Q9H0K1 926 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 LINC00597Q9H2U6 94 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 KCNK12Q9HB15 430 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 ANLNQ9NQW6 1124 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 XPO7Q9UIA9 1087 aaKnown RBP16.34■□□□□ 0.21
USP40-206ENST00000443711 AP4E1Q9UPM8 1137 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 HS3ST4Q9Y661 456 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 WNT6Q9Y6F9 365 aa16.34■□□□□ 0.21
USP40-206ENST00000443711 TCF20Q9UGU0 1960 aaKnown RBP16.34■□□□□ 0.21
USP40-206ENST00000443711 GOLGA6L7A0A1B0GV03 622 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 I6L893 689 aaPredicted RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 RARAP10276 462 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 TNNT1P13805 278 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 TACR2P21452 398 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 MSNP26038 577 aaKnown RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 GDI1P31150 447 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 GJC1P36383 396 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 FAM133BQ5BKY9 247 aaKnown RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 PIK3R6Q5UE93 754 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 RAP1GAP2Q684P5 730 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 TXNRD3NBQ6F5E7 133 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 NADSYN1Q6IA69 706 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 CYP4V2Q6ZWL3 525 aaPredicted RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 NT5DC3Q86UY8 548 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 CHSY1Q86X52 802 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 ADGRG2Q8IZP9 1017 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 SLC44A3Q8N4M1 653 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 FAM83CQ9BQN1 747 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 DHX35Q9H5Z1 703 aaKnown RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 GPATCH2LQ9NWQ4 482 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 DDX56Q9NY93 547 aaKnown RBP16.33■□□□□ 0.2
USP40-206ENST00000443711 OR12D3Q9UGF7 316 aa16.33■□□□□ 0.2
USP40-206ENST00000443711 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.33■□□□□ 0.2
USP40-206ENST00000443711 C19orf67A6NJJ6 358 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 MIF4GDA9UHW6 222 aaKnown RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 F5H5T6 163 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 PSTPIP1O43586 416 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 FTCDO95954 541 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 CTNNA2P26232 953 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 L1CAMP32004 1257 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 NRG1Q02297 640 aaPredicted RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 AUHQ13825 339 aaKnown RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 SMTNL2Q2TAL5 461 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 EML3Q32P44 896 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 KCNT1Q5JUK3 1230 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 ZNF569Q5MCW4 686 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 ZFYVE27Q5T4F4 411 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 LRRC31Q6UY01 552 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 LGI2Q8N0V4 545 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 C17orf53Q8N3J3 647 aaPredicted RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 HSPH1Q92598 858 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 CD101Q93033 1021 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 ATP2A3Q93084 1043 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 PRMT1Q99873 361 aaKnown RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 BRD9Q9H8M2 597 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.32■□□□□ 0.2
USP40-206ENST00000443711 MYOFQ9NZM1 2061 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 SNX10Q9Y5X0 201 aa16.32■□□□□ 0.2
USP40-206ENST00000443711 CCDC66A2RUB6 948 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 TSPAN3O60637 253 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 NFATC1O95644 943 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 CYBBP04839 570 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 SLC6A4P31645 630 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 CTNNA1P35221 906 aaKnown RBP16.31■□□□□ 0.2
USP40-206ENST00000443711 ZNF135P52742 658 aaPredicted RBP16.31■□□□□ 0.2
USP40-206ENST00000443711 NR1H3Q13133 447 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 PDK2Q15119 407 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 CA9Q16790 459 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 ATP13A4Q4VNC1 1196 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 MPPE1Q53F39 396 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 ODF2Q5BJF6 829 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 RABGAP1LQ5R372 815 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 RFWD3Q6PCD5 774 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 MAP7D3Q8IWC1 876 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 PYROXD2Q8N2H3 581 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 UBL4BQ8N7F7 174 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 KCTD6Q8NC69 237 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 IRF7Q92985 503 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 TMA16Q96EY4 203 aaKnown RBP16.31■□□□□ 0.2
USP40-206ENST00000443711 ZFYVE19Q96K21 471 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 EPAS1Q99814 870 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 MAGEB5Q9BZ81 275 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 SPHK2Q9NRA0 654 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.31■□□□□ 0.2
USP40-206ENST00000443711 PCDHA3Q9Y5H8 950 aa16.31■□□□□ 0.2
USP40-206ENST00000443711 DOCK4Q8N1I0 1966 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 E9PAM4 449 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 GFRA2O00451 464 aa16.3■□□□□ 0.2
USP40-206ENST00000443711 TRDMT1O14717 391 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms