RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 GPAMQ9HCL2 828 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 EVA1BQ9NVM1 165 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SOHLH2Q9NX45 425 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TRIM13O60858 407 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 CAPN1P07384 714 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 PTPAQ15257 358 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 NEK10Q6ZWH5 1172 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ZNF786Q8N393 782 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 C3orf20Q8ND61 904 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TRPC4APQ8TEL6 797 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TBL1YQ9BQ87 522 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SYT15Q9BQS2 421 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SLC24A3Q9HC58 644 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ACAT1P24752 427 aaKnown RBP12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 USP49Q70CQ1 688 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 GATAD2AQ86YP4 633 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 RGL4Q8IZJ4 473 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 FAM9CQ8IZT9 166 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ANKS1AQ92625 1134 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SH3BP4Q9P0V3 963 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TMEM114B3SHH9 223 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 HSD17B3P37058 310 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 TAF2Q6P1X5 1199 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 GPC2Q8N158 579 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ENGASEQ8NFI3 743 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 DPF2Q92785 391 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SERPINB12Q96P63 405 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 BBS4Q96RK4 519 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 EHD4Q9H223 541 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ZDHHC9Q9Y397 364 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 LMO7Q8WWI1 1683 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 A0A087X0T9 212 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 LOC100653049A0A140TA62 436 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 KRT34O76011 436 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 AKR1A1P14550 325 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 SERPINB1P30740 379 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 POLR2LP62875 67 aaKnown RBP12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 ARHGEF3Q9NR81 526 aa12.34□□□□□ -0.43
CCDC88A-207ENST00000436346 WDR27A2RRH5 827 aa12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 KPNA3O00505 521 aaPredicted RBP12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 PARNO95453 639 aaKnown RBP12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 CSNK2BP67870 215 aa12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 RCN1Q15293 331 aa12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 FBXL19Q6PCT2 694 aa12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 USP45Q70EL2 814 aa12.33□□□□□ -0.43
CCDC88A-207ENST00000436346 ZNF839A8K0R7 811 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 CES2O00748 559 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 JCHAINP01591 159 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 CHRNB3Q05901 458 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 DNAJC3Q13217 504 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 REPS2Q8NFH8 660 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 EXO5Q9H790 373 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 OVGP1Q12889 678 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 STX5Q13190 355 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 DET1Q7L5Y6 550 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 SLC13A5Q86YT5 568 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 TRAPPC5Q8IUR0 188 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 MICU2Q8IYU8 434 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 CYP4Z2PQ8N1L4 340 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 PIK3R5Q8WYR1 880 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ARHGAP23Q9P227 1491 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 TBC1D3BA6NDS4 549 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 RBP1P09455 135 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 SERPINB3P29508 390 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 FAM83AQ86UY5 434 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ROPN1BQ9BZX4 212 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ZNF518BQ9C0D4 1074 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ROPN1Q9HAT0 212 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 PARVBQ9HBI1 364 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ATP6V1HQ9UI12 483 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 GTF3C4Q9UKN8 822 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 RBAK-RBAKDNI3L0D1 243 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 UQCRBP14927 111 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 HSPA13P48723 471 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 XRCC4Q13426 336 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 FIG4Q92562 907 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ELOVL4Q9GZR5 314 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 KCNF1Q9H3M0 494 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ZMYM5Q9UJ78 669 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 PXDNQ92626 1479 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 PDZK1P1A8MUH7 402 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 EIF2S1P05198 315 aaKnown RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 MDM1Q8TC05 714 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 SLC2A14Q8TDB8 520 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 NACC2Q96BF6 587 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 RTFDC1Q9BY42 306 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ASAH2Q9NR71 780 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 SOX13Q9UN79 622 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 PPP1R37O75864 691 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 MARC1Q5VT66 337 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ZNF410Q86VK4 478 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 GLIS2Q9BZE0 524 aaPredicted RBP12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ZNHIT2Q9UHR6 403 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 SPATA31D1Q6ZQQ2 1576 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 TYMPP19971 482 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 CSHL1Q14406 222 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 TAF13Q15543 124 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 TRAPPC12Q8WVT3 735 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 USP7Q93009 1102 aa12.33□□□□□ -0.44
CCDC88A-207ENST00000436346 ZNF318Q5VUA4 2279 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms