RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 CCR1P32246 355 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CAP2P40123 477 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 NAMPTP43490 491 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 RXRGP48443 463 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SNRPD1P62314 119 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 CSNK2BP67870 215 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 GRSF1Q12849 480 aaKnown RBP eCLIP5.87□□□□□ -1.47
HERC4-206ENST00000427635 NDUFA9Q16795 377 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 KBTBD12Q3ZCT8 623 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 RAET1GQ6H3X3 334 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 GPAT2Q6NUI2 795 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TPGS1Q6ZTW0 290 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 RNF44Q7L0R7 432 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TRAPPC11Q7Z392 1133 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CHAC2Q8WUX2 184 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CYGBQ8WWM9 190 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SMARCD1Q96GM5 515 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ABHD16BQ9H3Z7 469 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CTNNAL1Q9UBT7 734 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ZNF180Q9UJW8 692 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 PSME2Q9UL46 239 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 RIC1Q4ADV7 1423 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 A0A087WWV3 80 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 NPHP3-ACAD11A0A0J9YXS1 232 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CYP21A2P08686 494 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 USP17L7P0C7H9 530 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TRIM49P0CI25 452 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TRIM49CP0CI26 452 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 KLRC1P26715 233 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SERPINA4P29622 427 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CCL23P55773 120 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CNGA3Q16281 694 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 GALNTL6Q49A17 601 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 FAM220AQ7Z4H9 259 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 NANOGNBQ7Z5D8 188 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ADGRG2Q8IZP9 1017 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TSPAN14Q8NG11 270 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 THOC1Q96FV9 657 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 DEFB118Q96PH6 123 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 PANX3Q96QZ0 392 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ELOVL6Q9H5J4 265 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ATP13A1Q9HD20 1204 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 NT5MQ9NPB1 228 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SMPD4Q9NXE4 827 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TUBA8Q9NY65 449 aaPredicted RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 SOX13Q9UN79 622 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SCAF8Q9UPN6 1271 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 PLAAQ9Y263 795 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 USP20Q9Y2K6 914 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SH3GLB1Q9Y371 365 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CNTNAP4Q9C0A0 1308 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 A6NCN8 305 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 PRRT4C9JH25 899 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SPAG6O75602 509 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 GLUD1P00367 558 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ARPC4P59998 168 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 C12orf60Q5U649 245 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 RESP18Q5W5W9 173 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 IRGCQ6NXR0 463 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CCDC137Q6PK04 289 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 DHX40Q8IX18 779 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 LGI2Q8N0V4 545 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 SLAIN1Q8ND83 568 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 STARD8Q92502 1023 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 TUBA1CQ9BQE3 449 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 THUMPD3Q9BV44 507 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 SPATC1LQ9H0A9 340 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CDH7Q9ULB5 785 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 PAIP2BQ9ULR5 123 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 MTMR6Q9Y217 621 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 WDR19Q8NEZ3 1342 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 BHMG1C9JSJ3 638 aaPredicted RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 RAD51BO15315 384 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CA12O43570 354 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CFIP05156 583 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ZNF200P98182 395 aaPredicted RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 MKRN4PQ13434 485 aaPredicted RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 ACAP1Q15027 740 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 KRT31Q15323 416 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 C16orf86Q6ZW13 317 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 FAM45AQ8TCE6 357 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 C1orf54Q8WWF1 131 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 APBB2Q92870 758 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 CDCA5Q96FF9 252 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ELAC2Q9BQ52 826 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 POLD4Q9HCU8 107 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 DDX28Q9NUL7 540 aaKnown RBP5.87□□□□□ -1.47
HERC4-206ENST00000427635 SETD4Q9NVD3 440 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ITGA11Q9UKX5 1188 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 STON1Q9Y6Q2 735 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 ROBO2Q9HCK4 1378 aa5.87□□□□□ -1.47
HERC4-206ENST00000427635 UMODL1Q5DID0 1318 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 MCIDASD6RGH6 385 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 TAF4O00268 1085 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 PIK3CDO00329 1044 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 FARP2O94887 1054 aaPredicted RBP5.86□□□□□ -1.47
HERC4-206ENST00000427635 VAV1P15498 845 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 ZNF7P17097 686 aaPredicted RBP5.86□□□□□ -1.47
HERC4-206ENST00000427635 MASP1P48740 699 aa5.86□□□□□ -1.47
HERC4-206ENST00000427635 RAD23AP54725 363 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms