RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 STRIP2Q9ULQ0 834 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 DRG1Q9Y295 367 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 HBS1LQ9Y450 684 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 NEMP2A6NFY4 417 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 XPO1O14980 1071 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 LYNP07948 512 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 GSTT1P30711 240 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 ETV4P43268 484 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 GPD2P43304 727 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 PLIN5Q00G26 463 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MCL1Q07820 350 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CDC16Q13042 620 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MMEL1Q495T6 779 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 SLC9B1Q4ZJI4 515 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MPZL3Q6UWV2 235 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 MAPK15Q8TD08 544 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 RSAD1Q9HA92 442 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CYLDQ9NQC7 956 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 XPNPEP3Q9NQH7 507 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CPA4Q9UI42 421 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 CPSF3Q9UKF6 684 aaKnown RBP8.91□□□□□ -0.98
USP40-203ENST00000427112 TLL2Q9Y6L7 1015 aa8.91□□□□□ -0.98
USP40-203ENST00000427112 TK2O00142 265 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 TSPAN3O60637 253 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 KRT38O76015 456 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 ARF4P18085 180 aaPredicted RBP8.9□□□□□ -0.98
USP40-203ENST00000427112 IL4RP24394 825 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 MPSTP25325 297 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 GRIK3Q13003 919 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 TMEM132DQ14C87 1099 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 NOMO1Q15155 1222 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 NOMO2Q5JPE7 1267 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 WASHC2DQ5SRD0 308 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 PRAMEF19Q5SWL8 479 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 RNF34Q969K3 372 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 TBCBQ99426 244 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 CDHR5Q9HBB8 845 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 DPP3Q9NY33 737 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 HESX1Q9UBX0 185 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 AP4E1Q9UPM8 1137 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 ACTL7BQ9Y614 415 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 TTC3P53804 2025 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 BPTFQ12830 3046 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 A6NHS1 94 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 JUNP05412 331 aaKnown RBP8.9□□□□□ -0.98
USP40-203ENST00000427112 PYGLP06737 847 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 HNRNPCP07910 306 aaKnown RBP eCLIP8.9□□□□□ -0.98
USP40-203ENST00000427112 SLC10A6Q3KNW5 377 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 HABP4Q5JVS0 413 aaKnown RBP8.9□□□□□ -0.98
USP40-203ENST00000427112 RNF111Q6ZNA4 994 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 LDB1Q86U70 411 aaPredicted RBP8.9□□□□□ -0.98
USP40-203ENST00000427112 CEP70Q8NHQ1 597 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 OSMRQ99650 979 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 MED10Q9BTT4 135 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 GRIP2Q9C0E4 1043 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 WWP1Q9H0M0 922 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 TAGLN3Q9UI15 199 aa8.9□□□□□ -0.98
USP40-203ENST00000427112 COL24A1Q17RW2 1714 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 TCRBV5S1A1TA0A578 114 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 SPTLC1O15269 473 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 MAGEB2O15479 319 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 MFSD11O43934 449 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 DKC1O60832 514 aaKnown RBP eCLIP8.9□□□□□ -0.99
USP40-203ENST00000427112 VAV1P15498 845 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 EIF4BP23588 611 aaKnown RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 PRAMEP78395 509 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 MRPS35P82673 323 aaKnown RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 DSG1Q02413 1049 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 TBL3Q12788 808 aaKnown RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 SEPT6Q14141 434 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 PCSK7Q16549 785 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 ATG16L1Q676U5 607 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 PDPK2PQ6A1A2 396 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 NIPA1Q7RTP0 329 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 SPATA24Q86W54 205 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 WDR75Q8IWA0 830 aaKnown RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 NAT16Q8N8M0 369 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 SLC2A14Q8TDB8 520 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 AFG1LQ8WV93 481 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 MRIQ9BWK5 157 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 EIF2AQ9BY44 585 aaKnown RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 SETD4Q9NVD3 440 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 ADA2Q9NZK5 511 aa8.9□□□□□ -0.99
USP40-203ENST00000427112 MTF2Q9Y483 593 aaPredicted RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 MAFBQ9Y5Q3 323 aaPredicted RBP8.9□□□□□ -0.99
USP40-203ENST00000427112 ADGRA2Q96PE1 1338 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 TM9SF1O15321 606 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 MED7O43513 233 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 SIN3BO75182 1162 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 ALDOAP04075 364 aaKnown RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 HNRNPLP14866 589 aaKnown RBP eCLIP8.89□□□□□ -0.998e-7■■□□□ 12.7
USP40-203ENST00000427112 ZNF132P52740 706 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 HDAC4P56524 1084 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 AP2B1P63010 937 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FOXD4Q12950 439 aaPredicted RBP8.89□□□□□ -0.99
USP40-203ENST00000427112 TNFAIP1Q13829 316 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 KCNJ11Q14654 390 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 C6orf52Q5T4I8 152 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 FAM160B1Q5W0V3 765 aa8.89□□□□□ -0.99
USP40-203ENST00000427112 RWDD4Q6NW29 188 aaKnown RBP8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms